GgaEX6032975 @ galGal4
Exon Skipping
Gene
ENSGALG00000004730 | CLIC2
Description
chloride intracellular channel protein 2 [Source:RefSeq peptide;Acc:NP_001026285]
Coordinates
chr4:1801657-1803498:-
Coord C1 exon
chr4:1803392-1803498
Coord A exon
chr4:1803086-1803267
Coord C2 exon
chr4:1801657-1803003
Length
182 bp
Sequences
Splice sites
3' ss Seq
GCTTTTCCCTGCCCACCCAGACC
3' ss Score
7.52
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GTACCCTCATCTGAGCCCCAAATATAAGGAGTCCTTCGACGTGGGCAGTGACATCTTCGCCAAGTTCTCGGCGTACATCAAGAACTCACGCAAGGAAGCAAATAGCA
Seq A exon
ACCTGGAGAAGGCTCTGCTGCGGGAGTTTCAGAGGCTGGATCAGTACCTCACCACCCCACTGCCCGAGGAGATCGACCAGGACAGCGTGGAGGACATCACCATCTCCAAGAGGAAATTCCTGGATGGGGACCACCTGACTCTGGCTGACTGCAACCTGCTGCCCAAGCTGCACATCATCAAG
Seq C2 exon
ATTGCAGCCAAAAAGTACCGTGACTTCGAGATCCCAGCTGACATGACGGGTGTCTGGCGCTACCTCAACAACGCCTACGCCTGTGATGAGTTCAGCCACACGTGTCCTGCAGACGAGGAGATCGTGCACACCTACGCCAGCGTGGCCAGGAAGATGACCTAGCCCCCTGCAGGACATCGGTCCCTCACCTCCCACCAAACCCTGGCCAACAGAGGGGCTGGGGGGGGGGGGCGGGTTACGGCATCCCTACACCCCAGTTTTTGGAAAGAGCGCCTTGCTTTGCAGCCCCCACGTGCCACCAATGTGGACCGTACCTATGGATTGGTCACCGTGTGGCTGTGGGGGCAACCGTGTCCCCACCCCTACAATTCATCACGCGGCACATGATGGGAAAAGCCAAGCACCAGCCTAGAGTGGAAGAGCTGAGGCCTCCCAGTGTGTCCCACCACTGCTGGAAGAGATGGCACGTCCCTACAAGGTCCCACCACCACCCACGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004730-'9-4,'9-3,10-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=PD(0.1=0.0),PF134101=GST_C_2=FE(25.2=100)
A:
PF134101=GST_C_2=FE(42.0=100)
C2:
PF134101=GST_C_2=PD(16.1=42.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGGAGTCCTTCGACGTGGG
R:
TAGGTCATCTTCCTGGCCACG
Band lengths:
244-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]