BtaEX6047629 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015085 | CLIC3
Description
Bos taurus chloride intracellular channel 3 (CLIC3), mRNA. [Source:RefSeq mRNA;Acc:NM_001100301]
Coordinates
chr11:106230231-106233455:+
Coord C1 exon
chr11:106230231-106230337
Coord A exon
chr11:106230413-106230588
Coord C2 exon
chr11:106230672-106233455
Length
176 bp
Sequences
Splice sites
3' ss Seq
ACCGGGCCCCTCGCTCTCAGCTC
3' ss Score
7.69
5' ss Seq
AACGTGAGC
5' ss Score
6.06
Exon sequences
Seq C1 exon
ATTCCCCAGCTTGGCGCCCAGATACAGGGAGTCTACCGCAGCGGGCAACGACGTCTTTCACAAGTTCTCCGCCTTCATCAAGAACCCAGTGCCCGCACAGGACGACG
Seq A exon
CTCTGTACCAGCAGCTGCTGCGCGCCCTCGCCAAGCTGGACAGCTACCTGCGCGCGCCCCTGGAGCACGAGCTGGGCCGCGAGCCGCAGCTGCGCGAGTCCCGCCGCCGCTTTCTGGACGGCGATCAGCTCACGCTGGCCGACTGCGGCCTGCTGCCCAAGCTGCACGTCGTGAAC
Seq C2 exon
ACGGTGTGCGCGCACTTCCGCCAAGCTCCCATCCCCGCTGAGCTGCGCGGCCTCCGCCGCTACTTGGACTGCGCCCTGCAGGAGAAGGAGTTCAAGTACACGTGTCCCCACAGCGCCGAGATCCTGGCGGCGTACCGGCCCGTCGTGCGCCCCCGCTAGCGCCCCCCGCCACCTGCCCACTCGTCTGCAGCCCCATAAAGGCACCTCTGCCCCAGTGAGCGCGAAGGGGCATCGGAGGGACCAGAGGCCCTCAGTTTCTGCCACTACCGAACGCCCACCCTGGGCCGCTCAACTCCAGACAACAGCCCACGAGGACAGACAAGAGAAGCCGGTGGGCGGGGTGCGGTCCATCTCCCTACTCCTCGGGGATGGCAGGACTGGATTGGGCTCCCAAACCAGTCAGGCCAGGGTGGGGCGGCAGGATGGCTGGGGAGGGTGGAGAGCGAAGCCCCGTCTGGGCAACTCCGGGCCAGAGGGCGGGCCCCACATTCTTCAGCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015085-'3-6,'3-5,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.189 A=0.068 C2=0.000
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=PD(0.1=0.0),PF134101=GST_C_2=FE(27.5=100)
A:
PF134101=GST_C_2=FE(44.3=100)
C2:
PF134101=GST_C_2=PD(17.6=43.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCGCCTTCATCAAGAACC
R:
CTTTATGGGGCTGCAGACGAG
Band lengths:
242-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]