MmuEX7000808 @ mm10
Exon Skipping
Gene
ENSMUSG00000015093 | Clic3
Description
chloride intracellular channel 3 [Source:MGI Symbol;Acc:MGI:1916704]
Coordinates
chr2:25458115-25458776:+
Coord C1 exon
chr2:25458115-25458221
Coord A exon
chr2:25458304-25458479
Coord C2 exon
chr2:25458565-25458776
Length
176 bp
Sequences
Splice sites
3' ss Seq
TGGTTATCATTGCCCCCAAGCCC
3' ss Score
1.64
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
CTTCCCTAGCCTGGCACCCAGGTACAGGGAGTCCAACACAGCGGGCAATGACATCTTCCACAAGTTCTCTGCCTTCATCAAGAACCCAGTGCCTACACAGGACAATG
Seq A exon
CCCTGTATCAGCAGCTGCTCCGGGCCCTGACCAGGCTGGACAGCTACCTGCGTGCACCACTGGACCACGAACTGGCACAGGAGCCACATCTTCGTGAGTCCCACCGCCGCTTTCTCGATGGTGACCAGTTCACGTTGGCTGACTGCAGTCTACTACCCAAGCTGCACATTGTGGAT
Seq C2 exon
ACCGTGTGTGCACACTTCCGCCAGCTGCCCATCCCCGCGGAACTGTCCTGCGTTCGTCGCTACTTGGACAGTGCGTTGCAGAAGAAGGAGTTCAAGTATACGTGTCCACACAGCGCAGAGATCCTGGCTGCCTACCAGCCTGCTGTGCACCCCCGTTAGCCCCACTACTTCCATACACTCATCTGCAGCCCCATAAAGCATCTCTGCCCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015093-'1-9,'1-4,8-9=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.189 A=0.051 C2=0.000
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=PD(0.1=0.0),PF134101=GST_C_2=FE(27.5=100)
A:
PF134101=GST_C_2=FE(44.3=100)
C2:
PF134101=GST_C_2=PD(17.6=43.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGCAATGACATCTTCCACA
R:
GGGCTGCAGATGAGTGTATGG
Band lengths:
257-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types