GgaEX1015724 @ galGal4
Exon Skipping
Gene
ENSGALG00000026027 | CLIC3
Description
chloride intracellular channel 3 [Source:HGNC Symbol;Acc:HGNC:2064]
Coordinates
chr17:415522-417161:-
Coord C1 exon
chr17:417055-417161
Coord A exon
chr17:416739-416914
Coord C2 exon
chr17:415522-416357
Length
176 bp
Sequences
Splice sites
3' ss Seq
ACACTGCTGCCGCCCCACAGCGC
3' ss Score
8.87
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GTTCCCCAGCCTGGTCCCGCGGTACAAGGAGTCAAGGCTGGCTGGAAACGACATCTTTCACAAGTTCTCCACCTTCATCAAGAACCCAGTGCCTGCTCAGGATGAGG
Seq A exon
CGCTGCAGCGGAACCTGCTGAAGGCCCTGCTGAAGCTGGATGAGTACCTGAGCACACCCCTGGAGCATGAGCTGGCCCGTGAGCCCCACCTCCGAACCTCCCAGCGCCGCTTCCTCGATGGCGACCAGCTCACGTTGGCTGACTGCAACCTGCTGCCCAAGCTCAACATCGTGCAG
Seq C2 exon
ATTGTCTGCCAGCATTACCGCCGCTTCGGCATCCCCAAGGACCTGCAGGCAGTGTGGCGCTACCTTAACAACGCTGCTGAAACCAAGGAGTTCAAATACACCTGTCCCAGCAGCGAGGAGATCGTGCAGGCCTACCGCTCTGTCGTCCGGTCCCCGCAGTGAGCCGGGCAGACACCCAGGCGGGCACAGGGCTGGGCAGCAGCTCAGCACCACCTGGTGCTGCTGCTCCCACCACCATCCTGCCCGCACATGCCTGGGAGGGCAGAGCATCAGCACCCAAATTTCCCCAGCTGGCACCCAAGGTGCCTCGCATTGAGCCTGCCAACGCTTTCTTGCTTCTCGTGTCACCCTCCCTGCCTTGCCGGGACACCCTCGACCCACCCTGTGGGGCCTCAAGCATTAAGGATGGGTACAGCCATGGGCACTGCTTGTAACAGAACTGGGCAATGCTGAGGGGAGCAGTGGGGGCTGGGGAAGAAAAGCTGCCTGGAGAGCAGTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026027-'4-6,'4-4,5-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.017 C2=0.000
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=PD(0.1=0.0),PF134101=GST_C_2=FE(26.3=100)
A:
PF134101=GST_C_2=FE(42.3=100)
C2:
PF134101=GST_C_2=PD(16.8=42.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTACAAGGAGTCAAGGCTG
R:
GGGGACCGGACGACAGAG
Band lengths:
243-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]