Special

RnoEX0021770 @ rn6

Exon Skipping

Gene
Description
chloride intracellular channel 3 [Source:RGD Symbol;Acc:1307249]
Coordinates
chr3:2677590-2680565:+
Coord C1 exon
chr3:2677590-2677696
Coord A exon
chr3:2677779-2677954
Coord C2 exon
chr3:2678036-2680565
Length
176 bp
Sequences
Splice sites
3' ss Seq
CTGTCACCGTTGCCCCTAAGCCC
3' ss Score
2.59
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
CTTTCCTGGCCTGGCACCTAGGTACAGGGAGTCCAACACAGCAGGCAATGACATCTTCCACAAGTTCTCTGCCTTCATCAAGAACCCAGTGCCTACACAGGACGATG
Seq A exon
CCCTGTATCAGCAGCTGCTCCGGGCCCTGACCAGGCTGGACAGGTACCTGGGTACACCACTGGACCATGAACTGGCACAGGAGCCACACCTTTCTGAATCCCGCCGCCGCTTTCTCGATGGTGACCAGCTCACGTTGGCTGACTGCAGCCTGCTACCCAAGCTGCACATTGTGGAT
Seq C2 exon
ACCGTGTGTGCGCACTTCCGCCAGAGGCCCATCCCTGCGGAACTGTCCTGCGTTCGCCGCTACTTGGACAGTGCATTGCAGGAGAAAGAGTTCAAGTACACGTGTCCACACAGCGCAGAGATCCTGGCAGCCTACCAGCCTGCTGTGCACCCCCGCTAGCACCCCTACCTCCATACACTCATCTGCATTCCCATAAAGCATCTCTGCCACAAGTAACCGTGTCCTGAACATCCATGGCCAGAGACCCACCATGATGCCACCTCACCTATAGTGAGAAACATAGTTAAAGGTGGTTGCCCAGAGAGATGAAGGCAAGAAAGTCCACTGGGCAGAGCACAGTGCATCCTCCTCCATGGTGTGGGACAGAGGCCTGGGGCCCCTTACAGCTGCCTTGGCACAGAGGCATCAGGGATCTAGGGGACTGGATTAGTCTCCCAAACCAGTCAGGCCAGCACTGGGTGGGGTGCCCTGGATGGCCAAGAAGGGTGGAGAACAGAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015184-'8-13,'8-10,9-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.189 A=0.085 C2=0.000
Domain overlap (PFAM):

C1:
PF134171=GST_N_3=PD(0.1=0.0),PF134101=GST_C_2=FE(27.7=100)
A:
PF134101=GST_C_2=FE(44.6=100)
C2:
PF134101=GST_C_2=PD(17.7=43.4)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
HIGH PSI
Chicken
(galGal3)
HIGH PSI
Zebrafish
(danRer10)
HIGH PSI
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCCAACACAGCAGGCAAT
R:
GTGTATGGAGGTAGGGGTGCT
Band lengths:
257-433
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]