RnoEX0021770 @ rn6
Exon Skipping
Gene
ENSRNOG00000015184 | Clic3
Description
chloride intracellular channel 3 [Source:RGD Symbol;Acc:1307249]
Coordinates
chr3:2677590-2680565:+
Coord C1 exon
chr3:2677590-2677696
Coord A exon
chr3:2677779-2677954
Coord C2 exon
chr3:2678036-2680565
Length
176 bp
Sequences
Splice sites
3' ss Seq
CTGTCACCGTTGCCCCTAAGCCC
3' ss Score
2.59
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
CTTTCCTGGCCTGGCACCTAGGTACAGGGAGTCCAACACAGCAGGCAATGACATCTTCCACAAGTTCTCTGCCTTCATCAAGAACCCAGTGCCTACACAGGACGATG
Seq A exon
CCCTGTATCAGCAGCTGCTCCGGGCCCTGACCAGGCTGGACAGGTACCTGGGTACACCACTGGACCATGAACTGGCACAGGAGCCACACCTTTCTGAATCCCGCCGCCGCTTTCTCGATGGTGACCAGCTCACGTTGGCTGACTGCAGCCTGCTACCCAAGCTGCACATTGTGGAT
Seq C2 exon
ACCGTGTGTGCGCACTTCCGCCAGAGGCCCATCCCTGCGGAACTGTCCTGCGTTCGCCGCTACTTGGACAGTGCATTGCAGGAGAAAGAGTTCAAGTACACGTGTCCACACAGCGCAGAGATCCTGGCAGCCTACCAGCCTGCTGTGCACCCCCGCTAGCACCCCTACCTCCATACACTCATCTGCATTCCCATAAAGCATCTCTGCCACAAGTAACCGTGTCCTGAACATCCATGGCCAGAGACCCACCATGATGCCACCTCACCTATAGTGAGAAACATAGTTAAAGGTGGTTGCCCAGAGAGATGAAGGCAAGAAAGTCCACTGGGCAGAGCACAGTGCATCCTCCTCCATGGTGTGGGACAGAGGCCTGGGGCCCCTTACAGCTGCCTTGGCACAGAGGCATCAGGGATCTAGGGGACTGGATTAGTCTCCCAAACCAGTCAGGCCAGCACTGGGTGGGGTGCCCTGGATGGCCAAGAAGGGTGGAGAACAGAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015184-'8-13,'8-10,9-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.189 A=0.085 C2=0.000
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=PD(0.1=0.0),PF134101=GST_C_2=FE(27.7=100)
A:
PF134101=GST_C_2=FE(44.6=100)
C2:
PF134101=GST_C_2=PD(17.7=43.4)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCCAACACAGCAGGCAAT
R:
GTGTATGGAGGTAGGGGTGCT
Band lengths:
257-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]