DreEX6072630 @ danRer10
Exon Skipping
Gene
ENSDARG00000103340 | clic1
Description
chloride intracellular channel 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3202]
Coordinates
chr19:17474337-17477984:+
Coord C1 exon
chr19:17474337-17474443
Coord A exon
chr19:17476877-17477058
Coord C2 exon
chr19:17477138-17477984
Length
182 bp
Sequences
Splice sites
3' ss Seq
GAACTGTTTTTTTTGTGCAGATC
3' ss Score
8.99
5' ss Seq
AAAGTGAGA
5' ss Score
4.23
Exon sequences
Seq C1 exon
ATATCCACGGCTGGCAGCTTGCAATCCTGAATCTAACACTGCAGGTCTTGATGTGTTCTCTAAGTTCTCAGCCTACATTAAAAATTCAAACCCTCAGATGAACGACA
Seq A exon
ATCTAGAGAAGGGTTTACTAAAGGCCCTGAAAAAGTTGGATGACTATCTGAGCTCTCCTCTCCCAGACGAGATTGATGAGAACAGTGCCGATGATGTCATTTCCTCCACCCGTTCTTTTTTAGATGGACAGGAGCTTACCTTGGCTGACTGCAACCTGCTGCCCAAGCTACACATTGTCAAA
Seq C2 exon
GTTGTTTGTCTGAAGTTTCGAGGTTTCTCCATTCCTCGCTCTCTGACGTCTCTGTGGCGATATCTGGATGCAGCATATGCCAGAGAGGAGTTCTCATCCACCTGTCCCAGTGATGAGGAGATATATGTGGCCTACTCTTCTGTTGTGAAGGCGCTTAAATAGAGGAAGGGCATTCCTAGTCACGCTCTCATGTGTGTTATTACCAATTATCCTTCCAGATTACCCTAGTGTTTCATGTTACTGTCTCAAGCTTGAGGTTGTTTGCACCAGCAGGGTCCCAATGTTTCACTTTTAAACTAATTATGGTCAAATGTTTTATATTTTTAAAAACTTCTGAACCGCAGAGGTCAAAGTCATTTCTATTGTTATTCACATTGGTTGCCTGCAGTTTTAGTGGTAACAAGAATAAATATTATTTTATTTTTCAGTATTTTTATATTGCTTACTGTGAACTGCTCTTCACAGATAAAGACCTGTCTTTACATTCATCTTGACCTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103340-'5-8,'5-6,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.033 C2=0.000
Domain overlap (PFAM):
C1:
PF134101=GST_C_2=PU(5.6=13.5)
A:
PF134101=GST_C_2=FE(66.7=100)
C2:
PF134101=GST_C_2=PD(25.6=42.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTGCAGGTCTTGATGTGT
R:
GCGTGACTAGGAATGCCCTTC
Band lengths:
257-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]