RnoEX0021761 @ rn6
Exon Skipping
Gene
ENSRNOG00000029682 | Clic1
Description
chloride intracellular channel 1 [Source:RGD Symbol;Acc:1303043]
Coordinates
chr20:5042939-5049166:+
Coord C1 exon
chr20:5042939-5043045
Coord A exon
chr20:5045275-5045456
Coord C2 exon
chr20:5048773-5049166
Length
182 bp
Sequences
Splice sites
3' ss Seq
TAGCTTCCTCTCTCTCACAGACC
3' ss Score
9.98
5' ss Seq
CAGGTCGGT
5' ss Score
7.53
Exon sequences
Seq C1 exon
GTACCCAAAGTTGGCTGCTCTGAACCCCGAATCCAACACCTCGGGGCTGGACATATTTGCCAAGTTTTCTGCCTACATCAAGAACTCAAACCCGGCCCTCAATGACA
Seq A exon
ACCTAGAGAAGGGACTCCTGAAAGCCCTGAAGGTTCTAGACAATTACTTGACATCCCCCCTCCCGGAAGAAGTGGATGAAACCAGCGCCGAGGATGAGGGCATCTCTCAGAGGAAGTTTCTGGATGGCAATGAGCTCACCCTGGCTGACTGCAACCTGCTGCCAAAGCTTCACATAGTCCAG
Seq C2 exon
GTGGTGTGCAAAAAGTACAGAGGATTCACCATCCCGGAGGCGTTCCGTGGAGTGCATCGGTACTTGAGCAACGCTTACGCTCGGGAAGAATTCGCCTCCACCTGTCCTGACGATGAAGAGATAGAGCTGGCCTATGAGCAAGTGGCCAGGGCTCTCAAATGAGCACCTTTTTAAGGGTCCTTCACCCACTCTGTGCTCTCCACAGAGGCTTCCACGTTGCTACATAATGGACACACTCCGATATAGCCAATGGGCAGGAAATCCGGGGCACTTGTGCAGGGCCGGGGATGGGACTGGGGATAAGGGAAAGATTAGAGGACAAGGGTAAGATTTTTATTTTTGGGTGGGTTGGGTAAGACAACGTATTTCAGTAATAAAATACAGAATGGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029682-'12-10,'12-7,15-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.197 C2=0.000
Domain overlap (PFAM):
C1:
PF134101=GST_C_2=PU(5.6=13.5)
A:
PF134101=GST_C_2=FE(66.7=100)
C2:
PF134101=GST_C_2=PD(25.6=42.6)
Main Skipping Isoform:
ENSRNOT00000068435fB3201
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGTTGGCTGCTCTGAACCC
R:
CACTTGCTCATAGGCCAGCTC
Band lengths:
245-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]