BtaEX6098430 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013533 | CLIC1
Description
Bos taurus chloride intracellular channel 1 (CLIC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001015608]
Coordinates
chr23:27396553-27398934:+
Coord C1 exon
chr23:27396553-27396659
Coord A exon
chr23:27397095-27397276
Coord C2 exon
chr23:27398543-27398934
Length
182 bp
Sequences
Splice sites
3' ss Seq
AACTCCCTTCTCTTGCACAGACC
3' ss Score
7.49
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTACCCCAAGCTGGCAGCTCTGAACCCTGAATCCAACACAGCTGGGCTGGACATATTTGCCAAATTCTCTGCCTACATTAAGAATTCAAACCCAGCACTCAATGACA
Seq A exon
ACCTGGAGAAGGGGCTCCTGAAAGCCCTGAAAGTATTAGACAATTACCTGACATCCCCCCTCCCAGATGAAGTAGATGAGACCAGTGCTGAGGATGAGGGGATCTCTCAGAGGAAATTTCTGGATGGCAATGAGCTCACTCTGGCTGACTGCAATCTGTTGCCCAAGCTCCACATAGTACAG
Seq C2 exon
GTGGTATGTAAGAAGTACCGGGGATTCTCCATTCCGGATGTGTTTCGTGGAGTGCATCGATACCTGCGCAATGCCTATGCTAGGGAAGAGTTTGCTTCCACCTGTCCAGATGATGAGGAAATCGAGCTGGCCTATGAGCAAGTGGCCAAGGCCCTCAAATAAGGCCCTTCCTAGGGCCACCCGACCCCCCCTCCATTTTCTTCACAAAGGCCCTGGGTGGTTTCCACATGCTACCCAACGGACACACTCAAAATGGCCAGTGGGCGTAGAATCCTGAAGCACCTGTGCAGGGCTTGCTGGGGGCGATGAGAAGCAAGGATGGGGGATCTTCGAGAGATTTTTATTGTGGGGTGGGTTGGACAATGTATTTCAGTAATAAAATACAGAATGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013533-'6-9,'6-5,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.148 C2=0.000
Domain overlap (PFAM):
C1:
PF134101=GST_C_2=PU(5.6=13.5)
A:
PF134101=GST_C_2=FE(66.7=100)
C2:
PF134101=GST_C_2=PD(25.6=42.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTCTGAACCCTGAATCC
R:
CCTTGGCCACTTGCTCATAGG
Band lengths:
245-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]