DreEX6083561 @ danRer10
Exon Skipping
Gene
ENSDARG00000044776 | clic3
Description
chloride intracellular channel 3 [Source:ZFIN;Acc:ZDB-GENE-010507-2]
Coordinates
chr21:13566927-13569025:-
Coord C1 exon
chr21:13568919-13569025
Coord A exon
chr21:13567729-13567904
Coord C2 exon
chr21:13566927-13567597
Length
176 bp
Sequences
Splice sites
3' ss Seq
TTTAATGTTGAATCTTTCAGTGC
3' ss Score
6.79
5' ss Seq
AAGGTCATT
5' ss Score
4.32
Exon sequences
Seq C1 exon
ATATCCCAAGTTATGCTGCCGCTATAAGGAGTCTAACACGGCAGGCGATGACATCTTTCATAAATTCTCTGCATATATCAAAAATCCCAATCCTGGACTCAATGACA
Seq A exon
TGCTGGAGAAGAAGTTTCTAAAGAGCTTGATGAAGTTGGATCAGTACCTGTTAACTCCCCTTCCTCATGAACTGGACCAGAATCCAGAGTTATCGACGTCCACTAGACACTACCTGGACGGAAATGCACTCTCTCTTGCTGACTGCAACCTGCTTCCAAAACTACACATCGTCAAG
Seq C2 exon
GTGGTGTGCAAAAAGTACAGAGGTTTTGAGATTCCTGCAGAGCTAAAAGGCCTTTCAAAGTATTTGGACAAAGCATACAAGGAGGATGTTTTCCACCTGACGTGCCCCAAAGATAAGGAGATCCTTCTTGCCTACAGTTCAGTGGCCAAATATCTTAACAAGTAGAACTGGACTTCAAAGAGGGCGGAGGACAAAGAGTGTGTGGACTTTTTTTTTTTTGTGTAAATCTTTTCTTGTGTTTGCTCCAAAAACAGCCTTCAATATGTATGCTCTTAATGGGAATCATTATATATGGGTGGAGGTTGTTTTTGTTAGTTTTTCATTTAAAAACCACAACTTGTGAATATCAGATGCCTGCCCTGCTTGTTGCTGCCATTTTTAGTATTTAAAAGTGTGTCGCTTGTGTCTGTGGTTTTGATGGCTTGCGTTTGTATGATAGCCACTCGTTTAGAAACATCTGCGAATGTTGTCTTTGAAGGCCATATGAAATGAGACATGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044776-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.102 C2=0.000
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=PD(0.1=0.0),PF134101=GST_C_2=FE(26.1=100)
A:
PF134101=GST_C_2=FE(42.0=100)
C2:
PF134101=GST_C_2=PD(16.7=41.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGCCGCTATAAGGAGTCT
R:
TTTGGCCACTGAACTGTAGGC
Band lengths:
244-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]