HsaEX6064144 @ hg19
Exon Skipping
Gene
ENSG00000169583 | CLIC3
Description
chloride intracellular channel 3 [Source:HGNC Symbol;Acc:2064]
Coordinates
chr9:139889087-139889744:-
Coord C1 exon
chr9:139889638-139889744
Coord A exon
chr9:139889382-139889557
Coord C2 exon
chr9:139889087-139889291
Length
176 bp
Sequences
Splice sites
3' ss Seq
CCGCGCCGCCTGCCCCCTAGCCC
3' ss Score
5.98
5' ss Seq
GACGTGAGC
5' ss Score
5.28
Exon sequences
Seq C1 exon
CTTCCCCAGCCTGGCGCCTCGTTACAGGGAGTCCAACACCGCCGGCAACGACGTTTTCCACAAGTTCTCCGCGTTCATCAAGAACCCGGTGCCCGCGCAGGACGAAG
Seq A exon
CCCTGTACCAGCAGCTGCTGCGCGCCCTCGCCAGGCTGGACAGCTACCTGCGCGCGCCCCTGGAGCACGAGCTGGCGGGGGAGCCGCAGCTGCGCGAGTCCCGCCGCCGCTTCCTGGACGGCGACAGGCTCACGCTGGCCGACTGCAGCCTCCTGCCCAAGCTGCACATCGTCGAC
Seq C2 exon
ACGGTGTGCGCGCACTTCCGCCAGGCGCCCATCCCCGCGGAGCTGCGCGGCGTACGCCGCTACCTGGACAGCGCGATGCAGGAGAAAGAGTTCAAATACACGTGTCCGCACAGCGCCGAGATCCTGGCGGCCTACCGGCCCGCCGTGCACCCCCGCTAGCGCCCCACCCCGCGTCTGTCGCCCAATAAAGGCATCTTTGTCGGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169583-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.189 A=0.061 C2=0.000
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=PD(0.1=0.0),PF134101=GST_C_2=FE(26.9=100)
A:
PF134101=GST_C_2=FE(43.3=100)
C2:
PF134101=GST_C_2=PD(17.2=43.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCACAAGTTCTCCGCGTTC
R:
GCCTTTATTGGGCGACAGACG
Band lengths:
244-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)