HsaEX6054040 @ hg19
Exon Skipping
Gene
ENSG00000155962 | CLIC2
Description
chloride intracellular channel 2 [Source:HGNC Symbol;Acc:2063]
Coordinates
chrX:154505500-154509357:-
Coord C1 exon
chrX:154509251-154509357
Coord A exon
chrX:154508438-154508619
Coord C2 exon
chrX:154505500-154507353
Length
182 bp
Sequences
Splice sites
3' ss Seq
CTATTACTTCATTGCCTCAGATT
3' ss Score
6.82
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GTACCCTCACCTGAGTCCCAAGTACAAGGAGTCTTTTGATGTGGGCTGTAACCTCTTTGCCAAGTTTTCTGCATACATTAAGAATACACAAAAGGAGGCAAATAAGA
Seq A exon
ATTTTGAAAAATCTCTGCTCAAAGAATTCAAGCGTCTGGATGACTACTTAAACACCCCACTTCTGGATGAAATTGATCCAGACAGTGCTGAGGAACCCCCAGTTTCCAGAAGACTATTCTTGGATGGGGACCAGCTAACACTGGCTGATTGTAGCTTGTTACCCAAGCTGAACATTATTAAA
Seq C2 exon
GTTGCTGCCAAGAAATATCGTGACTTTGACATTCCAGCAGAATTCTCAGGAGTCTGGCGTTATCTCCACAATGCCTATGCCCGTGAAGAATTTACCCACACGTGTCCTGAAGACAAAGAAATTGAAAATACTTACGCAAATGTGGCTAAACAGAAGAGTTAGGAGAGCTCTTACAGGAGAAAAGGCTATATTTGTGATCAGATTTTACTTATTGACATATTAGAAAGGTTTTTGCAAATAAGAATATGAAAAATACTGTTTCTTCTATCCAACTCTCTTATGAAAAGGAACTCTGTATTTTCTATTAGCCATAAATAATCTGTCCACTGTATTTTACAGGTCTTCATACTTTTACTTAATTTTCTTTATCTGTATGGCAAACCACTGCAATCCTGAATGACATGGAAAGCATCACAATCTTTTGCCCTTTGCTTGAATTCCTGGAATGCATACATATAAGCTAAACAGATGTCTGCAGTTATAAATGTCATAAGTAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000155962-'4-6,'4-4,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.079 C2=0.151
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=PD(0.1=0.0),PF134101=GST_C_2=FE(25.0=100)
A:
PF134101=GST_C_2=FE(41.7=100)
C2:
PF134101=GST_C_2=PD(16.0=42.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCACCTGAGTCCCAAGTA
R:
TCTGTTTAGCCACATTTGCGT
Band lengths:
258-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)