RnoEX6064097 @ rn6
Exon Skipping
Gene
ENSRNOG00000000903 | Asl
Description
argininosuccinate lyase [Source:RGD Symbol;Acc:619974]
Coordinates
chr12:30175830-30176695:+
Coord C1 exon
chr12:30175830-30175892
Coord A exon
chr12:30176351-30176465
Coord C2 exon
chr12:30176611-30176695
Length
115 bp
Sequences
Splice sites
3' ss Seq
AGGCCTGTTGTCCCTTCCAGCTG
3' ss Score
8.89
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
AACTGAACTTTGGAGCCATTACGCTCAACAGTATGGATGCCACCAGCGAGAGAGACTTCGTGG
Seq A exon
CTGAGTTCCTGTTTTGGGCTTCTCTGTGCATGACCCATCTCAGCAGGATGGCAGAAGACCTGATTCTCTACGGTACCAAGGAATTCAACTTTGTGCAGCTCTCCGATGCCTACAG
Seq C2 exon
CACCGGAAGCAGCTTGATGCCCCAGAAGAAAAACCCAGACAGCTTGGAGCTGATCCGGAGCAAGGCGGGCCGAGTGTTTGGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000903-'11-12,'11-10,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.069
Domain overlap (PFAM):
C1:
PF0020615=Lyase_1=FE(7.1=100)
A:
PF0020615=Lyase_1=FE(12.9=100)
C2:
PF0020615=Lyase_1=PD(9.2=93.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAACTTTGGAGCCATTACGC
R:
CCGTCCAAACACTCGGCC
Band lengths:
146-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]