DreEX0015252 @ danRer10
Exon Skipping
Gene
ENSDARG00000033361 | asl
Description
argininosuccinate lyase [Source:ZFIN;Acc:ZDB-GENE-040426-1152]
Coordinates
chr21:31216455-31229815:+
Coord C1 exon
chr21:31216455-31223708
Coord A exon
chr21:31225027-31225141
Coord C2 exon
chr21:31229731-31229815
Length
115 bp
Sequences
Splice sites
3' ss Seq
ATTTGTGTGTTTTTGGACAGCTG
3' ss Score
8.27
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
TATACACACAGAAAAAAAAATGTTTTCTGCTTGTTCTTATTTAAAATGAGCTGAAACAACACAATTCTTGAGATTTTATTGGGACAGCTTAATTGTTTTACGTTCAATCCACTTAATCATTAATAGTTAGCTTAATCGATAAATGCTGGGATGATATTAGTGAATTGTGTGGAATCCTACATTTTTTACTGTGCATTTAACCCTCCTGGGATGTTTTGTTGTGGATAAAAATATACACTATTACATATTATATTTGCTTTTCAGTGGAGCCATTGCTGGGAATCCCTTCGACATTGACAGAGAACTACTTCGCCAAGGTTGACATAATTTTATAAATTAGCTTTCCTGTAACTCATGCTTTAATTAAATTCTAATATAATTAGTGATTTGTGTGAATTTATTAATCCGATTATTTTTTTTTTTTAATAACTCCACAGAACTCAGTTTTGACAGTATCAGTATTAACAGCATGGATGCTACTGGACAGAGGGATTTTGTTG
Seq A exon
CTGAGTTTCTCTTCTGGGGATCAATGTGTCTCACGCACCTTAGCAAAATGGCAGAGGATCTGATTTTGTACAGTACGAAGGAGTTCTCCTTTATCAATCTGACTGATGCATACAG
Seq C2 exon
CACTGGGAGCAGTTTAATGCCTCAGAAGAAGAACGCAGACAGCCTGGAGCTCATCCGCAGCAAAGCAGGACGAGTGTTTGGAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000033361-'10-11,'10-10,11-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0020615=Lyase_1=PD(8.7=90.9)
A:
PF0020615=Lyase_1=FE(12.9=100)
C2:
PF0020615=Lyase_1=PD(9.2=93.1)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACTTCGCCAAGGTTGACA
R:
CAGGCTGTCTGCGTTCTTCTT
Band lengths:
243-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]