MmuEX6021317 @ mm9
Exon Skipping
Gene
ENSMUSG00000025533 | Asl
Description
argininosuccinate lyase [Source:MGI Symbol;Acc:MGI:88084]
Coordinates
chr5:130489039-130489895:-
Coord C1 exon
chr5:130489833-130489895
Coord A exon
chr5:130489271-130489385
Coord C2 exon
chr5:130489039-130489123
Length
115 bp
Sequences
Splice sites
3' ss Seq
AGGCCTGCTGTCCCTTCCAGCTG
3' ss Score
8.54
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
AACTGAACTTTGGGGCCATCACTCTCAACAGCATGGATGCCACCAGTGAGAGAGACTTTGTGG
Seq A exon
CTGAGTTCCTGTTTTGGGCTTCTCTGTGTATGACCCACCTCAGCAGGATGGCAGAGGACCTAATTCTCTATGGTACCAAGGAATTCAGCTTTGTGCAACTCTCAGATGCCTACAG
Seq C2 exon
CACCGGAAGCAGCTTGATGCCCCAGAAGAAAAACCCAGACAGCCTGGAGCTGATCCGGAGCAAGGCGGGCCGAGTGTTTGGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025533-'15-26,'15-25,17-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.069
Domain overlap (PFAM):
C1:
PF0020615=Lyase_1=FE(19.4=100)
A:
PF0020615=Lyase_1=FE(35.5=100)
C2:
PF0020615=Lyase_1=PD(25.0=93.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGAACTTTGGGGCCATCAC
R:
CGTCCAAACACTCGGCCC
Band lengths:
146-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: