BtaEX6110043 @ bosTau6
Exon Skipping
Description
Bos taurus argininosuccinate lyase (ASL), mRNA. [Source:RefSeq mRNA;Acc:NM_001034428]
Coordinates
chr25:28249879-28250659:-
Coord C1 exon
chr25:28250597-28250659
Coord A exon
chr25:28250105-28250219
Coord C2 exon
chr25:28249879-28249963
Length
115 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTTTTCTCCCACAAGCCG
3' ss Score
5.37
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
AACTGGACTTTGGGGCCATCACTCTCAACAGCATGGATGCCACCAGTGAGCGAGACTTTGTGG
Seq A exon
CCGAGTTCCTGTTCTGGGCTTCGCTGTGCATGACCCACCTCAGCAGGATGGCTGAGGATCTCATCCTCTATGGCACCAAGGAGTTCAGCTTCGTGCAGCTCTCAGATGCCTACAG
Seq C2 exon
CACCGGAAGCAGTCTGATGCCCCAGAAGAAAAACCCAGACAGCCTGGAGCTGATCCGGAGCAAGGCGGGGCGAGTGTTTGGGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015314-'17-21,'17-19,18-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.069
Domain overlap (PFAM):
C1:
PF0020615=Lyase_1=FE(7.1=100)
A:
PF0020615=Lyase_1=FE(12.9=100)
C2:
PF0020615=Lyase_1=PD(9.2=93.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTTTGGGGCCATCACTCT
R:
AAACACTCGCCCCGCCTT
Band lengths:
138-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]