RnoINT0000451 @ rn6
Intron Retention
Gene
ENSRNOG00000056832 | AABR07002682.1
Description
NA
Coordinates
chr1:80944126-80951319:+
Coord C1 exon
chr1:80944126-80944331
Coord A exon
chr1:80944332-80951091
Coord C2 exon
chr1:80951092-80951319
Length
6760 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
ACGCTGTGCTGCCTTCCCAGGTC
3' ss Score
8.76
Exon sequences
Seq C1 exon
CTTCCGCTGCAGGAGGTTGAGAGGCCACCCTATTCCGGTTGGGGGATGTGGGAACTGTAGTTTGTGTAAGAATAACTTTCTCAGCAGGAGATTATGTCCTCCTTTCTCCCTTCGGAAATTCTGGGAAGTGTAGTCCGGGCTGCTAATGAGGGAAGAGTCACTTCCGCCCCAGGTGTGCGAGGCCTTGTCCTGTTCCTTTCAGAAAG
Seq A exon
GTGAGCCCTCCCCTTTACTGACCCCTCCCGAGTCTGTGCGATCCGTTTCAGGTTTCCATGTGCGATAGCCACTAAGTGTGTATCCTGGGTAAGGAAATCTGCCTCTGAAAGGCAGAAGGCGACCTTTGAAAGAGCCTGCCCAAGCGTGCTGCGATTGCACAAACTGACTGAGGTTTAGCCAGGGGCTGTCAGTCACCTGGATGGAGGATCTGCTGGGTGTTGTGCACCCCCAGCCGCCTTCCTAGCCCCAGTCAGCGATGCCATCTCCCAGCAGTGGAGTTCAGATTCTCCATCTCTGCCTCCGTTTCTTCCTTCACTCCTTGGTACCTAGCTAAGAGTGATCTAGAGTTTCCTGCAAGGCTCAAAACAGCTGACGCGTGGTAGATGGGACATTTGCAATCAGTACTCTCCAAATTCCAGAGAAGCTGGAAGCTTTAGTGTTGCTCTCAGAGCTCCTGCTGTAGGGTCTCTTGACGCAGCCTGTCCCCATTATCAAAACCCTTAATGACATTTTTGTCGTTGAGACAATCGTTTCCAGCTGTTGTGTGCAATGTCCACTGTGCCTTATGGGGGCGGGGAGGGGGGGTTTGCTGAAGTTCGATTTCTCCCAGAATCTTGTCTTCTTAATCCTTTATTTGAAAAGTGCTGCAGGGAAAAGGGGTAGCACAGAACGTGGTGGTGGTGCAGTAGTTTGAATGAGAAGCATCCCTGTAGTGTCTGGCCTTCGGATGCTAGGTCCACAGTTTAGAGGGCGGGGTGCTGTTTCTGGAGGTGGTGCGGCCTTGCTGGAGGAAGTACGTCATGGGGGCGGGGTCAGGCCCCTAGACGTTTACTTGCTCTGCTCTGTGCTTCAGGTGGCCTGTGGTATCTTTCAGTTTCTGTATCCTGTTGACGAGCCTGCCACCTGCCATGCTGTCCCTACCATTAAGGAACTGAAAGCCAAAATAAATGCATTCTCCCACAAGATGCCTTATTCATGGTTTTTTATCACAGCAACAGAAAAGTAACTAGTACACACATGGATAGAGCTTAGCATCCTTCTGTCAATCCTTCCTACCTCCTCTTCTGAGGAGTGAGGTTCCCTTTACTCATTGGCAGAACCAGTTATGAATAAGTTCTGGACGGGATGAAGAAATGCTTGGACATAAACAGTAAGGATGCCATTTAATACTAAATGCTGAAAGGGTTTTATACAAATTAATAAATATAACTCTTATAAGAGCTTTATTGGAGTGCAGTCATCATTATTTAATTTACTTATTTTTATCACATCTATTTAAGGAAAAAGTAAAATTTGTTTTTTAAAACATAGGCTAAAAATTTACTGAATGTACCAAAAAATATAAAAGTATTATCATTACATTCTGTGTTCCTAGGTGATTATATTTCTTCTTTATAGTCTAAACTACTTTTTTAATCGGATACACTACAGAGTCATTTCTACGATCTTTTTAAAAATATTTTATTTATTTAATGTATATGAGTACATTGAAGCTGTCTTGAGGTACACCAGAATCTGTTACAGATGGTTGTGAGCCACCGTGTGGTTGTTGGGATTTGAACTCAGGACCTGTGGAAGAGCAGTCGGTGCTCTTAACCACTGAGCCACCTCTCCAGCCCCATCTCTACAATCCTGTCTGTACTAGGCATACTGAAATGTCTCAGCCTGCAAAAGCACTTGCCACCAAGTCTGCCATCCTGAGTTTGATCCTCAGGACTCTCATGGTGGAAGAAGAGAATTTCTGTAGATGCGCACACCCTCAAATAAATAGACGCTTCTTTAAAAAGTGGAATTGGGGTTGGAGAGATGCTTAACAATCAATACTGTTTCTGCTCTTGCAGAGACCCCAGCTTCAGGTCCCAGAACCCAGAGGTGACTTGTAACCAACTGTTACTCCAGTTTCCAGGGACTCACTGGCCTCTGAGGACACGGAATGCCTGGGGTTGCAGATAGACAAGCAGGCAGACACATAATAATAAATAAAAATTAAAATATAAAGGGCAATGTTGAAGTCCTCAACCCATATATTAAAACAAACAAACAAACAAAAACAAGAAAATGAAACATGTGCCCAGCCCTAAGTTTAACTCCTAGCCCCGTGTGAGAGAAAAAGCATAGAATGTATATCTTTCTTGATAGAGATTTTGTCAGTTATAGCAAGCAGGGTACCCCACGCCAAGGCGTCTGGATTTCACAAGCAGTATTGGAGTGTTTGTATTAAACATGCTGTAGGGGGGCCACAAAGGTGGTTCAGCAGGTAAAGTTAAATCCCTGGGAGCCACGCGGTGAAAGGAGAGACCCAACTCCCACAATTGCCCGCTGACTTCCACACACAGGTGGTACTTACTGTGCACATGGCCACATAGTAAGTAAATAAAATTTTAGCTGGGTGTGGTGGTGCACACCTCTAATTCCAGCACTCAGGAAGCAGAGGCAGGTAGATCTCTGAGTTTGAAGCCAGCCTGGTCTACAAAGAAAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTTTAAAAAAAAGAAAAAATAGAACAAGGCTTGGAGAGATGGCTCAGAGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTTCCAGCAACCACATGGGGGCTCACAACCATCTGTAATGGGATCCGATGCCCTCTTCTGGTCTGAAGACAGCTACAGTGTACTCATATACGTGAAGTAAATTTTAAAAAGATAGAAAAAAAAATAGAACAAAAAACTTTTTCAATTTTAACAAACTAAAATAAACACTGTGAAAAATTAGACATACTTGTTACAATTCACGATCAACCGCCAAGAAGAAACAGAAATTCTGGAACTAGAGTAAGAAGATAAGAGATAAAATGACCCAGCTCCGGGGGAAAAAAAAGATAAAATGAATGAAATAGTAAAAATAAATAAATACATAATAAACAGCGTAGGTGAAAGCAGTTAAGGAGGACCGAGGGTACAATGCGTTCTCTTCAGTTTCGTTGTTTGTGATGGGCGGAGTTTACTGGTGTCTCCGGTGCTGATCTCAGATCGGTCTCTCATCTAAGCCACACTGTTTAGGGAATAGGAGCGGTCTAGAGTTCCCATCATGCCTCTTGCCTTGTGCAGGAGGAATTAGCATCACCCGTTTGTGTGGGTGTGCCCTGCAACAGGGACCTTCGCCTCAAATCTATCCAACTTCTTTGAAAATGGCTGTGAAAGAAGCGCCCCTCTATCCCTGCCCCCAGGCAGCTTCGGTGGGATGCTAGAGAACGTAGCCTTTTTAGGTGATGTGTATGGATTTATAGCCACTAATCTAAATAAACACACTGTTCAGAGACAAATGAAACCTGGCGTGTGGACTGTTAACTCGAGCGGCGACGAGAGAGGTGGCCTTAGCATGTTTGATGTTTATTACGGGCAGCTCCTATTCTCTAACACTTTTGGTCCATGCCCTGGTTTCTCCTTCCAAATCAGACTGGATTTTTGTGTGCCTATCTGTGCAGTGCATGCATATGTATTTTGGGGGTAAACACCCACGCAAGTGCAGAGACGGGAGCAGGAGGAGGACATCAGATGTCCTTCTCTATCACTGCTTAATTCTCTTGAGACAGTCTCTCACTGAACTTGAAGCTAGGTCAGTGTCCTGCAAGCCCCAGCAGTCTTCCCGTCTGCACCTCCCATAGGCACACAGTCAGGGAGTTCTCTTCACATGGGTGCCGAGGACTGAGCTCACTTACTTAGGCTTGGGCAGCAAGCCCTCTGAATACTGAGCTGTCTCCCCAGCCATTTCGTTATTTTGTTATGCTGGAGGTAGAACTCAATGCCTCTATCACTAAGCCGCTTCACCAGCCCCTCACTGGTGAGTTCTGTATATTGGCTCTGTCACTGAACATTGTGTGACACTTCCTGGGGAGACATGACCAAATATCTACTCATCCCAGGTAGGGAACCAGTGACAACCCAAAAAGTCCAACATGGTGAAGCAGTGGGTTTATTGGGGTTAGTCACAGGAGTATGGGTGAGGAGTAGGAGCAGAAATTAGTCAAAGACAGTCACATCTCTAAAGCTCACTCCAGCATGGGTGACAGCTCACGAAACTGGGAACCCGGAGCACACCACACAGCCTGCGGGCAGACCAACAGGTTAGAGAGCGTCCTTTTCAGGTTATAACTTTAATTTTTTTTTTGAAGTCTACTTTTAATGATGGTTCTTACATGCTTTAGCCTACCTTGTAGCCCACCACCCCGCCGAGGTAGTGAGAAAGAAAGGATACAGGGGAAGTGGACCTGTTTAGAAAGGTTCTTTAGAGCATCTCCCATCTGTGTTGTCTGGAAATCAGAAGTTCAATTCACAGGTCAGCAGCAGCAGCTTGATCCACTCACAAACACTTGGAGGATACACCCGCAGTCTAGTTCTGTAGCGTTGGGGTAGCCAACAGGAATCAGCAGTGGTGGCATTACCTGGCAGAGGAAGCCATGCCTCAGTCTCAGCTCAAGTTAGCAGGAGGGGACCAGGAGGGACACCAGGAGTTCTCGGCTGTGTCTTTCTCAGGGAAGCGAAGATCAATGAAGACCCACAAGTGTTGCACAGCTAGCTCTGTGAGCAAGCCAAACAGCTTCTGTCACTGTCCATCTAGTCCTGTTTATACCCTCTAAACATCACATGTCCTCCACGGGTCTTGGCTCAGCATGTGAATCTGTCTTAGCTGACCTCACTCTGCCAATCAGCCAGAGTCTGTGGAAGTGGCAAGAAACTGCCGCACACGACCAGAAATTTTTTGGTGCATTTCTCTCTATGGAGTCCCAACAAATGTAACTCAACTATGCAAAGTAAGGCGGACCAATACATGTGTCCTTCCACACACTTGCTTTATCAGACACATCTTTTCTCCTGTGTCTGCTTCAGCTAAATGTTCCCTCACAAATCTGCCTTTGTCTTTCACCTGTGTCCACTCCTTTACGTGTTTGCCCCAGCAAAACACCTTCCAAGACAACTGACTCTCCAAAGAACCTTTAAGTTTACATTTCACCAGGTAGTTCAGTGAAGTCTGCTCAAGCTAGTCTCTGCTTCTGGGACCTCAGATGTGATGTGAACCTCTTCTATTCTTTACTGCTTATAATAGTCTGGGAAGGGAAGGTCTAGTGAATCTGATCAGTTTCAGGGATTTCCTGACACTTTTGAGTTGTGTTAGATGGTAAAACCATGCCAGGAAGTTTGGTAAGGTAGAGCAGGTTGAGACCCAGAGATCTGATGGGCACACATCTGAGACTTAGGGGATTCTCTGTTCCCTGCCAGATTCCTGGCCTAGAACATATGCCGTGTTCCTCACAAAAAAGAAATGTGTTCTATGAACATGTAGGCCCAAAACAGAGTTCTCCATGCTAATGAAGTACCTAGAGGGCTTAGCCAATAAGCTTCGTTTTTCCAGACATTCCTCCCTGCAAAAGGTATTTAATCTCAGGCTCACCCTGAGAAGTGGGTATGGTACATTATGCACCCAGTTTCTGCCACGAATGACCAATAAACTGTTTAGAACCATGGACAGTCTCTCTCATCAAGATCTCCACGGGGAGCTTTGGGAAAGGCATTTGACTACAGAGTTGCAGTGCTCCCAGATACAGTGGCTACCAAGCCTGCCTCCACCAAGCTAAGGACAATCACTGCTGGGACAAGCTGGACCCAGTAGCACCTGAATGTCCAAGAGTTTGAGAGCCCACAGCCCTGGGGACCCCCGAATCCAGCTTCTGCTTTGCATAGCAGTGGAGCAGACTCGGACCCACAAGTTATTTACTTCCTAAATTTTAGTAAGCTTCCCTGAAGGATTAAATGTTTTACCTCTCCTTAGAGCATGTTCTATGTCAGGAGGATCTCTGCAGGGTGGGATGTTTTATCTTGAAGACATTGCTACATAACACTGAGTCACACCCCCAGCCTCTCCTGGGATGGGAGTGGGAGGATTCTAGGCAGGGGCTCTACCACTGAATCACACTGCCCTCAGCCCCCTCAGTGGGAGATTCAATGCATACTCTTCCATGCAGGGAAATTCTGTGATGCAAAGTAGAATCCACTTCCCGGCAGTCATGGGGACATTGAGAGGTTTTGTTCCTTACTGAAACTGTCTACTCTTGGAACACAAAAATCCCAGCAGCCCTTAACACTGAGCGCTAGCACTGTTACAGTCATTTTGCAGAAGACAGAATTGAAGTGTTAGAAGTTCATGAACTGAGCACACAATAACACCAAACTCCTCTAAAAATAAATTAGTAACATTTATTTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGCGCACATCAGAGGACAACCTGCAGAAGCCAGTTCTCTTCTTTCATGTGTGTCCTGGGGATTAAACTCAGGTCATCAGGCTTGGCAGCAAGCCTCCTTACCTGCTGAGCCATCACGGCCCAGCCCCAGATTCTGAGCAAAGGCATTTTGTCCCTTGCTGTTACTTGGAACCAATGTATTTCTCCAGCTTCCTTCACCACATTTCCCAGGACAAGAGTGAGCACTCGGGGAGATGGCCAGCATGTACTAAAGGCAGCTGGGAAGTCCGGTTCTGTTTATAGCCTGGGGCGGGACATCCTGGGGTGCCTAGAATGTGGTGCGCATGCTCCAGTGGGCAGCGTGTGCATAAGGCTGCTTGCAGAGGGGAGAGGCAGCTTGATCTCACTGTGTTTTCCCTCTCTCATGGTGTCTATCACGCTGTGCTGCCTTCCCAG
Seq C2 exon
GTCTCCATCGTTTCCTAGGAAAAAGGAGGAGAAAATGACCAAATTGCAGGTGAGTTAATTTTTATTTGTGCGGTTACGTTCCCCTCCTGTTTCAGAGTGGGCACACTGTTCCTCAGTAAGGAATGGCAGCAGGTACGGGCTGCGTATGTATCGGGTGCAAAGAAAAGTCTACTTTTGTTTATTTTAAAATCTATTTGTTTATTCATGGGGGAGCACTCATGCCACGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056832:ENSRNOT00000084874:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]