RnoINT0000882 @ rn6
Intron Retention
Gene
ENSRNOG00000055996 | AABR07006032.1
Description
NA
Coordinates
chr1:214736433-214737007:+
Coord C1 exon
chr1:214736433-214736533
Coord A exon
chr1:214736534-214736855
Coord C2 exon
chr1:214736856-214737007
Length
322 bp
Sequences
Splice sites
5' ss Seq
TGCGTAAGT
5' ss Score
9.73
3' ss Seq
CCCGTCCATATTCCATACAGTAC
3' ss Score
6.12
Exon sequences
Seq C1 exon
TGTGTGATGCCCCCATGATCTATTTTGACTGTCGTAATGCCACACCTGGTGACACTGGAGCTGGATGTCAGAAGAGCTGTCACACCCTAGATATGACCTGC
Seq A exon
GTAAGTGACCTGGTCACTCCCTAATAACCGTCCCTGGGACCTTCCTGATGAAACCCTTACTTCCTTGACCTCTCCTGCTACGGTGTCTGTGGAGACCATTAGCCCCCCTCATGTCTGCTTCTGGAGAAGAGCAGCAGGGCCTTCCAATGCTGAGGGCCATCAGGGCAGCATGGGTAGACTGTGTTCTCTGAGCACCTCTGGTCTCTCTGCTGTTGAGTGTCCTGTTCCCATGGTACCTGCAGCTCTGCAGGCCAAAAGGACATGCCAGCCCCAGGCATCCATTCATATTCAGTCCCATTCACCCCGTCCATATTCCATACAG
Seq C2 exon
TACAGCTCCGAGTGTGTGCCTGGCTGTGTGTGCCCGAATGGGCTGGTGGCAGATGGCAATGGAAGCTGTGTTGTTGCTGAGGACTGCCCTTGTGTGCACAATGAGGCCACCTACAGGCCTGGGGAGACCATCCAAGTGGGCTGCAACAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055996:ENSRNOT00000085159:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PU(51.6=94.1)
A:
NA
C2:
PF0182612=TIL=PD(45.2=54.9),PF0009313=VWC=PU(32.8=39.2),PF053758=Pacifastin_I=PU(37.5=23.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGATGCCCCCATGATCT
R:
GTTGTTGCAGCCCACTTGGAT
Band lengths:
251-573
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]