RnoINT0001319 @ rn6
Intron Retention
Gene
ENSRNOG00000023908 | AABR07009919.1
Description
EGF-like and EMI domain containing 1 [Source:NCBI gene;Acc:310269]
Coordinates
chr2:117103542-117109638:+
Coord C1 exon
chr2:117103542-117103679
Coord A exon
chr2:117103680-117109515
Coord C2 exon
chr2:117109516-117109638
Length
5836 bp
Sequences
Splice sites
5' ss Seq
TAGGTAATG
5' ss Score
7.57
3' ss Seq
AAATGTCCTCTGCCCTTCAGACT
3' ss Score
6.44
Exon sequences
Seq C1 exon
GAATTGAATTAGAAATTGTCAATATCTGTGAAAAGAACAATGGCGGTTGTTCTCATCACTGCAAGGCTGCGATTGGTGGACCCCATTGTTCCTGTAACCACGGACATCAGCTCGATACAGATGGGAAAACATGCATAG
Seq A exon
GTAATGTATGGCGGACACCATCTTCATGCAGAGTTTCTCTGGACTCATTTAGCACTTTGATTCTAAAACACATTCTGAGCCACATCCCTCAGACTGAGAGGTGCTTTTAACTGTGTCTCTGACTACTGATACTTAGCAAAGGCAAGCAAATACTTGGGTATTTACCTTGAAATTAAGGAGATTGAAACACTGTTAATGAGATCTATGGGGCTATTAACTCTATGTAAGCACAAATTATTGTTTTATTTCAAACAAATATACTAAAGTCTATCTAAGCTATTAAACTTGTATGCCAACAGCAGATAGAACACTGTCTCCCATGTCCTCCTGCCTCAAGCAGAAATGAAATCATTGTTTTTCAGTTTGGTAATGATTTGGATGAATAATTCAGTTGGGCAATGGCAACTTTCAATAAAAGAAAAGTTTATAAGATGATCACTTTATACATACCAGGTCAAACCCATTCTTTTTTATTTAATTATGTGTATGTCTGTGTTTGTGCATGGGCATGTGTCCATGCATGTGCAGGTGACGACTAAGTCAGGAAGAGAGAGTTAGATTCCCTGGAACTGGAGTTTCTCGTGATTGTAAGCTTCCTAATACAGATGCCATGAAGAGAACTTGGTTCTACTAGAAGAGGAAAACATGCCCTTCACCATGTAGCCACCCTAATTATTATCATTTATATCATTTGGAACAATGAGGAGAGTGGTCCCAATTTAGCCTTCCCTCATTAAAATGTGCTACATGGAGATCTCCCAGTGTCTCTCTGCTAAGCAGTATGGGAGGAGCACTGCTGTGCTCTGCTTCTGAAACACTCTCTTCAACAGTGAGGCCTCTGCATCCTGGAGCAGAGACTTTACTGATTTTACTTAGTGCTATGTGCTTCCTCTCTTTAAAGTGATAGTACGACGACGGCAAAAGCACTCCCTTTTCACTGTACACCATCCAACATGATAGGAGATCGTTTCAAGCCCTGAGAGAGGTGGCTTAATCACTGGGTTCCATTATTTTATTTCACGCTTCAGCATTATAAGAGAATGAATCACATGAAATTTATAGTATTCTGCTCTTTATAGTATTTTTTAACTTACTTCATATGTTTTTTATTGGTTATTTTATTTATTTACATTTCAAATGTTATCTCCCTTCCCTGTTTCCCCTCCTTAAACACCCTATGCCATCTCCCCTGCATCTATGATGGCGCTCCCACACCCACCCACCCACTCCCTCCTCACTGCCCTAGCATTCCCCTATGCTAGGGCATCGAGCCTTCACAGGACCAAAGGCCTCTCCTCCCATTGATGCCAGACAAGGCCATCCTCTGCTATATATGCGACTGGAGCCATGGGTCCCTCCATGTGTATTCTTTGGTTGGTGGTTTAGTCCCTGGGAGCTCCGGGGCATCTGGTTAGTTAATATTGTTGTTCTTCCTATGGGGTGTCAAACCCCTTCACCTCCTTCAGTCCTTCCCCTAACTCTTCCCTTGGGGTCTCCTTGTTCAGGCTGATGGTTGGCTACAAGCATCCTCATCTGTATCAGTATGACTCTGGAAGACTGATACAGGAGACAGCTCAGGAGACAGCTTTATCAGGCTCCTATCACTATGTACTTCTTGGCATCTGCAATGGTGTCTGGGTTTGGTGTCTGTATATGGAATGGATCTGCAGGTGGGGCAGTCTCTGAATAGCTTTTCCTTCAGTCTCTGCTCCACTTTTTGTCCCTGTATTTCCTTTAGACAAGAGCAATTCTGGCTTTTTGAGAAGGGCGAGTGGCCCCATCCTGCAACCAGGGGCCTTGCCTAAGCTCTGGATATGGTTTCTATAGGTTCTCTGTGCACTTTGTTGGGCATTTCAGCTACTTTCATCCCTGTTGGGTCCTGGGAGCATTTTGCTTTCCTGGCATCTGGAACTTGCTGGTGGCTACTCCCAGTTCCCCATCCCTCATTGATACACACCTCTGTACAATTTCCTCACCCTCTGTACACCTCCCCTGTCTCCTCCCACACCTGATCCTGCCCCCCATTTTCCCTTCCCTCTCCTTTCTCCCAATCCCTCTCACCTCTATCTCCCATCATTATTTTGTTCACCTTTCTAAGAAGCACTGAAGCATACACAATTTGGTCTTCCTTCTTCCTGAGCTTCAAATGGTCTATGAGTTGTATCATGGGTATTCTGAGCTGTTTTCCTAATATCCACTTATCAGTGAGTGCATACCATGGTTTTTTTTTTTTTGGGGGGGGGGGTTGGACTGGGTTACCTCACTCAGGATATTTTCTAGTTACATCCAGTTGCATGCGAATTTCATGAAGTCATTGTTTTTAATATCTGAGTAGTATTTCATTGTGTAAATGTACCAGATGAGGAACATCTGAGTTGTTTCCAGCTTCTGTCTATTATAAATAAGGCTGCTACAAACATAGTTATTAAACCTATGTGTTTGTTTTTCTTGATCCAATAATATCTTCTACACTGCTATGAGTCTATGGTGTCCAACATACCAGAACCAATTGCTTTCCTTGTGTCTCTTGCAATGAAAAATATGCCACATTTTCTTTCTTATTAATACTTAAATTTATGAAAGAAATTTGTTTTCCTCTCTTCCTCACTTTCTTTTTCCTCCCTCTCTTCCCTCCTTCTTTTCTTCGTATGAGTACTAAACAGAGAAAACTGGAAACGTTCATTCATTCATTCATTCATTCATTCAGTTCATTAGTTGGTTGAGATTTGGGGGGGGGGGGGCAAAGTTTCTCTTATAGCCCTGGCTGTCCTGGAATTCTATATATAGACCAGGCCGGCATTGAACTCAGGTATCTGTCAGCCTTTAATTCCCAAATGCTGAGATTAAAGACATGAGCAACCACCACATGGAACATGTATGTATATGTATGTACATACATATATATGGAGAGAGAGATATAGAGATGGTGATAGATAGATACAGATATATATACAGATATAGATATGTAGATAGATAGAAAGATCAATAGATGAATAGATACCTTTAGTCTTTGAAAAGTACAATTCAGGAAACTTTTCTTATTTAGAGCTAGAAAAAAGTATAGCATCTGCCAGGGTCAGAATGCAGAAAACTGCATATTTATGAGATTTCAGCAGTCAACCAGGCAATGTTACCTCGAGAGCTATGGAAAGTGGCCTTGGACCGACAGTCATATAAAAAGTAGTTTTCTGACCTCAGTGAGGAATTCCAAATAAAACGCATGGCTAGTTTCTAGGGGGCATGTTTTAGTTTAGTGGTTTTATTCAGTGACTGTGTGCAGAGGATGGGGTTTTTCAGTCTGGTGCTTCTCAGAGCTTAGTGGATAAGAAGTGTTCACCTCAGTACTGCAAGTCTTCTAGTTTTGTCCAGGGCAAGATTTTCCTGGTAAGCGGTTCATTCCATCACTGCTGCTGTGTTATATTCCGTGCAGTTGCCAAAGCCATAACGTATGATCACAAGAGAAACCAGACAAGCAACAACTTTGTCAGGGATATGAAAAGAAACTAAGACATTCAGAAATCAGGTGGTAAAAGCTTGAAATGTCAGTGTTTTCTAGAAAAGACTTGAAGTAAGGATGTAGGCAGTGAATCACTTGCTCTGTGAGTGTGAAACCCTGAATTCTGATCCCCAGAACCACATAAAAAACTGGGCTTGTAATCCCAGAACTCAGAGGTAGAGACAAGAGAATATTTCTGGCTTTTTGGCCAGCTGACCTAGCAAATAAAAGACTCTTTTATAAAACAAAGTGGGGAGAGCATTGAAGAAGACTCACGATACATATGCATTCTCCCCCATGACATGCATGTGTACTTTCCACACACATTACATGTATGTACACCCATATCCACAGATGACATACATAAATACCCAAACCCACATCTTGCATGCACGTACACTATACCCATACATGCCATGTATGTGTACCATACCCACACATGGTATGTATGTGTATACATCCATACCTACACATGACATACATATATACCCCATACCCACATGTGGCATACATGTACATCATACTCACACATAGCAAGCATGTAAACCATACCCACAGATAACATACATGTACACCCATGCCCACACATAACATGCATGTACACCCCTATCTACATATGTCATGCAATTATACCTACACATGCCATGCGTGTATACCATACCCAGATCCACATGATTTGTATGGTAGAAGCAGAAAGTTTATGCTGAGATTTTGATCCTCAGTCAGTGTACAGGAGAAAGCTAAGAAATCTTCTCAGAGCAATGGAAATTGCAAGATAATCTAAAATAAACCAAAACAATAGTAATCAGAATAAGGGGCATATTTTCAGTATTATGGGAGGAACCTGTATCCCTTGTTGGCTGAGACCTATATGTATGCATGTTGGTAAGAAGCCCTGTTATTAAATCAAAAAGAAATATCTGAAATTTTAAAAGATCATAGAGACTAATGTTTTACATGAAATAAAACTGGTTCATCTTTTGTTTTTTAAGTTCTGTGTTCACCTCGTTTAAGAGAAAGGCCAGAGGAAGGCTTAATATGACAAAAACTAATAACTGTCATTTTCTGAGAAGAGCTCCTTGGGACATTGTGCAGGAGAAAGAAAGCATTGTGCCCAGATGACCTTCATTTAGATAGTTTCTGCTGACCCCTCGCCTTGACTGACTGACTGCATTTCCTTTTCTTCCTGTCTCTTGTCTTCATTTCCTTGAGTCTACTGACTCTTCCAAGGTTAATTGAGACATTGACCTCTTTGTACCTGTGTAGTCCTGGAGCAATAGGATTCTGTAAGCTCAGCAGTGACAGTCACCCAGCCTAACAGCTCAACACACAGAGGCTTGAATTGAACCAGGGCAAAAAGCCAACACCTTTACCATAAAATTCCCTGCTGCCAGGAGCAGAGGAAAACAGTGTCTGTTGCAACTCTTTCACTATTTTGCTTAGAATGACCCTTCAAAACTTGGGCCAAGTACATTGCTGTTTGGCTGAATGGTTTCAGCCTGACAGCCACTGAGGCCTTTTGATTTTCTGTAGGCCAGCTGCATCTTAAGAACAACCATTCATAACTGTAGACTTCTAGAGTGATAGTGCTATATAGACAACTGCTCATCCTACAGGACATTCTGGAGGAATAACATCACAGCTGTAACCAAACCCCACAGACCTCACCCATTCCATGACATGTATCACTGCCAGGTTTAAGAAAACACTCTGGGGACTGGAGAGATGGCTCAGCCATTAAAGGTTAGGGTCACAACCAAAAATATAAGAAAACACTCTGGAATATTTCAGAATTTAATGCACACGATGTGAAGTGTGCCTCTTTCCTTCATGCAGGCATATAGTTCCCACCCCTTCCCCTAGTTGAGTGTGAGGTGGGGTATTGACTTGGGAACACTCTTTGATCTCAAATCTTGAAGGAGAAACCCATTATGGAGTCTGGGGCTGTCTTCCTCTGTAGCTGTCAAACTAAATGGAATTCTCTGGTTCTTCCTTCTCAATCCTGTCTTTTTGTTCTTCAGGTTCTGTTTATTCAGATTGCTTTTCAAACTGGAAAAATAGCAGAGATCTCTCTTTTTCCTTATAAATGCATTTGAAGATTATTTACATTCCTTTAAAATAAATAACAGACATGCGAAGAGCTTGCAAGAAGCGTGAACCCAGAGTAGGTATCATTATTTTGTGTGATCATTTCTTCAGTGTCTATACTATGTGACTGGAGTAGTGGGAATTGGTTAATCAAATGGTCTTCTTTTAGGAGCGAGGCTTCCCAGAGGGAGCCTCTGCAGTTTTGTTGAGTTCTGTTTTCCTGCAGTAACACAAATGTCCTCTGCCCTTCAG
Seq C2 exon
ACTTTGATGAATGCAAGAGCGGAGAAGCCTGCTGTGCCCAGCTCTGTATCAACTACTTAGGAGGCTATGAGTGCAGCTGTGAGGAAGGCTTTCACATCGATGCGGATGGTTGTGGATGTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023908:ENSRNOT00000039603:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=76.6),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]