HsaINT0054562 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr3:168520689-168525439:+
Coord C1 exon
chr3:168520689-168520826
Coord A exon
chr3:168520827-168525316
Coord C2 exon
chr3:168525317-168525439
Length
4490 bp
Sequences
Splice sites
5' ss Seq
TAGGTAATG
5' ss Score
7.57
3' ss Seq
AGTGTTCTTTCCCCCTTCAGATC
3' ss Score
11.6
Exon sequences
Seq C1 exon
GGATTGAATTGGAAATTGTCAATAGCTGTGAAAAGAACAATAGTGTTTGTTCCCATCACCGTGAACATGAAATTGGTGCTCCCCGTTGTTCCTGTAACCATGGACACCAGCTTGATTCTGATGAGAAAACATGCATAG
Seq A exon
GTAATGTTTGGTAAATGCCATTTCATTCAAAAGTTGCTCTGGATTCATTTAGCCCTTTAATCTGTAGTACTTACGGCTGTACTGTGAGCCACATCTCTCAAACTGTAAAGACAAATAAATTGAAGAGTGTCTCTGGCTACTGAATAAATGTAAAAGAAGGGTTACCTGTCAGAAGACAACATTACATTTAGATATTTACCTTGAAGTTAAAGGAGATTTAAAACACTTTAATGAAATATATGCCCTTAATAGATTTATTTCAGGAAAATATTCCATGATCTATCCAACTATGTGATGTAATGTGTAATTCCAACAACAAATGCTGTCACATACCTCAGTTCTCTACCTCAAGCAGAAACGAAATTATTTGCACTGGTTTTCAACTTGATAATGTTTGGGATGTATGTTCAACTTTGATATGACAAGTAGCTATATTCTAAAAGACAACTTAAAAAAATTCATTCTTTGGAATTCCCAGCTCAAATCCATTTTTAATTGCTAATTTTCTCAACATATTATTGGAGTTTATATCATTTGAGACAATGAAGAAACTAAAATTCCACCCTAGTTTTGCTTCATAATGAAACATTCCTGAGAAAAAGGAGTATCTACTATAAATAGGAATAGCAAGTATCAAACTACATTACTATGTGCCCTGGTTCTGAGAACACTTCCAAGTCCCTAAGGCAGTGATTTGTCATCATTCAAGAATTATGACACCTTATTTGCTTGTTTTCTTTTGTTATGCTTAATATTTCCTCCGTTAAAAATTACAATACAAAATCTTTTGACCATTTCATACTACTCAATATGGTTAGATAGAGACAATTTGAAGTATGAAAAACTCAATGGTTTAAATATTTAGGACATTTTACTTTGGCAGTATGATGACACAGAATGAAACTCAAGAAATTTTGCAGTATTCTGGTTTTATAAATTCAAAACAATGCCATTGTATTTATTTATGCAACATTGCTTTCAATATTGTTCTCAGAATCTACAGTGGGTAACATATTGAAGCCAGTTGCTTTCCTCACCTCTTATTATTTAATGAAAAATATGCTTACTTTTATTTCCTACCTTGATAAGATTTGTAACCATAGAAAAAATTAAGGGCTTTCTTCCTTGATTGCTTCTTTTTTCCCTCCCTCTTTTCCTTCCTTCTATCTCTCTGTTTGTTCCTCTTTTGAGTATTGATAAGAGAAACTGGAATTTTGCCAAACTGTTTCTTTGCGACTTAAATTTGGTGTTTTCTTTATTTTTTGAAAAATACCATTCAGTAAAGTTCTTATTTACAGCTAGAAAAAAATAGCATCTGCCAGGGTCAAAATGTAGAAAAGTGCATATTTATGAAATTTCAGCCGTCAGTATGACAATGTTATATTGTTTATGGTTCAAGTTAATTTCATTTTTCCGACAAGAAAAAGAAAATGCAAGCCAAGCACTGAGTCTCATGCCTGTAATCCTGGCACTTTTGGGGGCTGAAGTGGGAGGATTGCTTGAGTCCAGGAGTTTGGGACCAGCCTGAGCAACTTCAAGAGACTCCATCTCTATAAAATATTTAAAAAATAACCAGGCATGGTGGTGCACTCCCAGCTACTTGGGAGACTGAAGTGAGAGGATCGCTCTAGCCCAGGATATTGAGGCTGCAGTGAGCTATGATTGTACCACTGCACTCCAGCCTGGATGACAGGGCAAGACCCTGTCTCAAAAATAAGTAAATAAATAATTCAATTTCATTTCATCTAAAACATTATTTTTTAGGCTTTTTAAAAGTTTTTCAGATTTTTAAAAAGTCTTCTCAGATACCACCAAAGACTTCGAGCATATCGGTCTCAAGATGCCCTGTTCTCAAATAGCAAGGAGCAACATTGCATTACACAATTGGAAAACAAGTCCCTCAGTCTATCATTTAGTGATCCATTTTGGATTCTTTTTCTATTAACATTCCTCTGGGGCTATTTCTAGTTTGTCCCATGTATACCATCCTCATTTGGAACTCATCTGAAACCCCGTTCTTCCTACATCACAAGCCTTTCTTAAAATGTCTTGCCACTTCAACTGTTAAATCACCTGTTTTCTAAATTTCTTTTCAAATTTTATTTTGTTAGATCTTTGCTTGCTACTGTAAATAGGAATAGCAAGTATTAAACTACGTTACTATGTGTCCTGATTCTGAAAATACTTCCAAGTTCCTAAAGCAGTGATTTGTCATCATTCAGGAATTATGATACCTTATTTGCTTGTTTTTGTTATGCTTAATATTTCCTCAATATTCTTTAATATTTCCTTTTCTTTTGTTATGCTTAATTTTCCCTTTTAATTGTCCTCATCTCTGATGATCATATTTTTCCTAAATTGGCCAATATGCCAAATATTTTACCATTGTACCCAAATTAATCCATACATAAAAATTTAGCCTTAATCAAAAGTAGAGGACCAATTGCAGCCAGGCAAAACACTGAAACATTTCAGCTCTGATTTCAGAAAAGCATCAAAAGTGAAAAACTTGATCTTCTGTATCTCTTCCCCATACATAGTCACTGAATAAGGTTAAATAATAAATATTTTCTAATAACTGGCCAATTGTTAAATTTAGTGACTTCATTGCTAGTCAGACACTTGCATTTTATATACCTGTCTTTCAAATTGTGTTAACACATCTCTAGGTTTTAGCCCTAATAAGTTTTTGCCTTTGGATAGGTTTAATTAACTATGTGCTAACTGGCTGACTTATTTTTACATTTTTTGTACATTCGCATATATATTTTTTCAAAGTTGATACTAATATATGATAAAAAGAAAATCCTTTGATTTCCTTCATGCATGACTGTTTTTTATGAAGCAGCTGTGACATTAATCTGTTCTCAGACAAATAAGTAAAATATGTATATGTACATTCCAAGTGAATAATTGCCTTTACACTAGTGAATAATTGGTCTTTAGAAATGAGTAGTTTTTTTTGTTTTTTGAGACAGGGTCTCGCCCTGTCACCCAGGCTGGAGTGCAGGTGGTACAATCACGGCTCACTGCAACCTCGAACTTCTCAGCTCAAGCAATCCTCCCACCTCAGTCTCCCAAAGTGCTGGGATTATAGGCGTGAGCTATTATGCCCAGCCTTGAAAATGAATTTTTTTAAAAGTTTTTTATTCTCTACATCATACTATTTAATCAGTAGGATTAATAAAAGGAAGGTTTAATACTAGAAAGGAAAAAATATCATTTAGAATTTTGTGAGTAGTTCTGCTTTTGACATTTTGTGGGAAAAAGAATGTTTTATGTCTAAATGACCTTCATTTAGATATTTTATGGTGACCCTTCACCTTGATTGATTGTATTTTCTTTCCTTTCTTTCTTTTGTCTTCATTTTCTTGAGTTGATACCCTTTCCAGGGTTAATTGAGACATTGACCCTTTTTATCTGTGGCTGCTTACGTAGTTATGGCATAGTAGGATTTTGTAAACTCAGCACTGACAGGCCATCCACCTTAACAGCTCAACAACAGAGGGGCTTGAATTGAACCAAGGCCTAGAGCCAAAAAAAACCCTGACCAAATAATTCCCAGGTGTTCGGCCTAAGGAAAGCAGGGCAAAGTGTCCGTTGCTACTTCCTTGGCCAATTATGTTAGAAATGATCGCCTCAAAACTCAGGTGAAATAGGTTATCCTTTGGCTGAAAACTTACAATTTGACATCTTCTGGTGCGTTTCTATTTTCCCCAGGGCAGTTATATCTTAATAAGAAGCACTCAGGATTGTAGAATTCTGAAATAACAGTGCTAAAGAAGGCTTACAGATCCTTACTTAGAAAACTGCTCACCTAACAGGACATTTCAGGGTAATGATGTCACAGATGGAATAAAAAACCCCAGACCTCACTCATCCCAGTCACAGTATAATCTAAATATTCAAACAAATGCTCTGAAATGGTCTATAATTTAAAACATAATACTTAAAATAAGTCTTCTGCCCTCTCTCAGAACTGTAGTTGCCACTTGTCTTCCCAGTCAGGCAGTTGGGAACACTTGCTTGCGAACACTCTTTGATCTGAAGTTCTGGAAGAACAAACATGTTATGGAGTCTAAGACTGTCTCCTCTTTGCAGCTGTCAAATGTTCACCAAATGGAATTTTTTGGCTCTTTTTTCTTAGGCTGTTTTTTTGTTCTTCAACTTCTCTGTTTATTCAGTCCAATTACTGTTTAAACTAGAAAAATAGCAGAGATCACTTTTCCTATGCCTATAAATGCATTTGGAGATTATTTACATTCTTTTAAAATAAATAACAGGCATAGAAGAAGCATGAAGAAACATAAACCAAAAGTAGGTCTCCTTATTTTTGTGTTAAGGTTTCTTCGCTGTTTGTATTACATGGCCTGAGAAATAGAAAATGATTAGTAAAACAGTTTTAATTTAGAAGTGTAGCTTATCAGTGCTTCTATAGGGTCGTTAAATTCCTATCTCTGCAATAACAGCAGTGTTCTTTCCCCCTTCAG
Seq C2 exon
ATCTTGACGAATGTGAGAATGGAGAAGCCTGCTGTGCCCAGCTCTGCATCAACTATTTAGGAGGCTACAAATGCAGATGTCAGGAAGGCTTTCAGATCACTTCCAATGGTTGTGAATGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
-EGFEM1P:NR_021485:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)