DreINT0179330 @ danRer10
Intron Retention
Gene
ENSDARG00000005216 | zgc:158328
Description
zgc:158328 [Source:ZFIN;Acc:ZDB-GENE-070112-1202]
Coordinates
chr15:35446256-35447626:+
Coord C1 exon
chr15:35446256-35446393
Coord A exon
chr15:35446394-35447509
Coord C2 exon
chr15:35447510-35447626
Length
1116 bp
Sequences
Splice sites
5' ss Seq
TAGGTATGT
5' ss Score
7.76
3' ss Seq
TTTGTGTGTGTCTTCCGCAGACA
3' ss Score
12.61
Exon sequences
Seq C1 exon
GAATAGAGATGGAGATTGTGAACGGCTGTGAGAAAAACAACGGTGGCTGCTCTCATCGCTGTGAACACACCACCAGCGGGCCCTTGTGCTCCTGCAACCAAGGCTACCAGCTCGCTGAAGACCTTAAGACATGCATAG
Seq A exon
GTATGTAGGCCGCATGATAGGTCTAAAGTCGCACTGCACTTTTCCATTCACACGCATGCCAATGCCACAGACGGAAACACATGCTGGTTCTGCAAGTTTAGCAGTTCGCTGAGTTGCAAAGTTCAAGTTTGGTCTGCGAAATCGCATTATGTGATGAGAGCATGAGAGCAATAGAAAATCAGAACATGACCTCTCTGGAGCGAAATTTAAAACATGGATCAATCGCTCCTTTTTTATGTCTACTTTTTTTATCCCGCTCCTTTTCACAGCGCTGCATGACAGAATTTTGCATGCTCAAACTCTGTTGTGACCACAGCATAAGACCATATAGTTATTTTGACATTATGAATTATGCATGAACATTACTGTATGTAAATTTGGGGCTGGAAACAAAAAGATGTTGCAAAATGCTTGATTTACCATAAAAAGTAAATAAGTAACAATTAGTTGGGGAGTTACTCAATATTGTAAATCATTAATTTTGAAAGTAACTTTCCCAAACACTTTTCCTTATTCAATAAAATATAATCACTTTGTTAAACTGCAGAGAAGAGATCAAGGTCACATTATGCAATGTAAATAAACTTACAAAAGAAAAACTTTGAATCACGAAATGGAGAACCTGTTAATTAATAATTAATAAATATTTTTACAGTGTCAGTTTTTAAATCCTCATTTTTTTTTTTTTTACAAAATTACATAATTTAACGAAAGACGAAAAAAAAGAGTAGTTGAAAAATCACCATTCTGTCATTTACATATGTTTAAATGCTGCATAGTAGCTAAACACATATTATACATGTACTTAAAGTCAAAATAATTTGCCCTCCTGTGATTTTCTTTTTAAATATTTCCCAAATGATGTTTAACGGAGCAAGAAAATTTTCATAGTATGTCTGATAATATTTTTTCTTTTGGAGAAAGTCTTATATGTTTTATTTTTGGCTAGAATAAAAGCAGTTTTAAATTTTTTAAAAACATTTTAAGATCAATATTATTAGCCCCCTTAAGCTATATTTATTTTTGATTAATATAATTCTGACTTCAACTGTACATGTCATATGATCATGTGTCATCTGACCAAATGTTTCTGTATTTTGTGTGTGTCTTCCGCAG
Seq C2 exon
ACATGGATGAGTGTGAAAACGGAGAGGCCTGCTGTAGTCATTTCTGTAAAAACTACCCAGGAGGCTACGAGTGCGGCTGTAGACCAGGATACACGCCCAACGGATGCACATGTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005216:ENSDART00000066737:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=76.6),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.0),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATAGAGATGGAGATTGTGAACGGC
R:
CGTCACATGTGCATCCGTTGG
Band lengths:
254-1370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]