GgaINT0031291 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NXF9]
Coordinates
chr9:19826187-19828612:-
Coord C1 exon
chr9:19828475-19828612
Coord A exon
chr9:19826310-19828474
Coord C2 exon
chr9:19826187-19826309
Length
2165 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
GAGCTGCCCCATCCTTGCAGACC
3' ss Score
8.59
Exon sequences
Seq C1 exon
GCATTGAAATGGAGATAGTGGACAGCTGCCAGCAGGACAACGGTGGGTGCTCCCACCGCTGCGAGCACACAGCAGCAGGACCACGCTGCTCCTGCCACGATGGCTACGTGCTCAGCTCAGATGGCAAGGCATGCACAG
Seq A exon
GTAACCTAGGGTACAATTCATGCTATCAAGACCACGTTTCACTGCACACAGCCCAAGCATCACATTGCTGAAGCTTTGTTTTGTTTTCCTTCCCTCGCTAGCCAGTTTAGGATGGGAGCATTACAATTGCATTAAGTTACAGCTGCATGTGCAGACTCTGCTTTGTGCTGTGGAAGTTGTTCTGTTTCCATGCTTAGTGGTGAGGTTGCACTCGGCTGCAAGAAGTGTCACTTAGGAAGTGGAAGCCACAGAATTACAGTTATTTTTATTTCAAGAAGAGCTTAAAAATTCCTTCATGTTTAATATAATTTTATGACAGGATTGTTTTTCTTTACAGCTTTTGCTATGCTATCCTGTTCTATTATCACTATGCCATTAAAATTTTAAGGAATAGACTAGAAGAGAGAGGAAAAAGAGAAAAGGAGCAGGCATTGTGGAAAAGAGCAGTTAGGTGGAAAGAGGGGCAAGGAGCAGGAGCTCTGGGGACAGCACAGACAAAGGTCCTGCAAGGAGAAAAGCCCAGAGCAAGGAGGATGGATGAGCAGGGCAGGAGGAAAGCACAATTCTGTAAGTGTGGCTGGTGCTGGAGCATGAGAAATGAGAATATAAAGAAGGGGACAGGGAGGCAGACATGGATGCTGAGCTAATGAGTTGGGCTGAGAAGGTTCCTTCAGCCCCATTCCTGTGCCGAGGAGGAGGCAGTGACTTGCTAATGGAGATGTCAATGTGAAAACCGCCCTGCTGGCCACAGCCAGGGAGCAAGAGCAGAGGTGAAGGGCTTGGCAAGACCAAGGGAGTGCAGAGCTGCTCTTAGCAGCAAAAATTTCCTTTTGGATGTACGTTTCGCATTCCTGCACAGACAATGGGCTGCTAATAGACCCCAGAGTGAGGTGCCGTCTGACAAAGTGCAGAGAAGCTCAGCTTGTGACATTTCTGGAAAACACTCCATGTCCAAATAACCTACATTAATAATTTTTGTGCTGACCTTCTCACCTCGACTGATTAATTACATTTTCCTTCTCCTCTTTCTCCTGCCCGTGTTTCCTTATAACGTTGGTGCTCTCTCCAAGGTTAATTGAGACACCGACCTTTCCCATCTGCTGCTCTTCGCCTAGGTAACGTTCAGAAATGTTTTGCAAACTCAGCATTGACAAGATGGCCTTCGATGGCCACTGAGCAGGGAAGCAGGCCGGGAGGGGGAGATCAGCCAGGAGTCTGCAGTCAGAAGATAGCAGCTTGATTCTTGCATCTTTGAACCAGCGTTGTGCACTTGCAGCCCTTTAGGCCAATGTGTCCTGGGCTGAATCAGCAGAGGGGTGGCAACAGAGTGAGAACTCTGCCCTCGTGAGCTGCCAGTACTGCATCCAGGCCTGGGGCCCCCAGCATAAGAATGACATAGAGGTGTTAGAGAGGGTCCACAGGAGGGCCACAAAGATGTCAGAGGGATGGAGCTTCTCTCTTCAGAAGAAAGATTGAGGGAGCTGGGCTTGTTCAGCCTGGTGAAGGGGAGGCTCCAGGAACACCTCATAGCTGCCTTCCAGTACTTAAAGGGAGCTAATAAATAGGAGGGATGTCAGCATTTTAAGTGGTCTGATAGTGACAGGACAGGGGGGAATGGTTTTAAACTGAAAGAGGGAGATTTAGGTTAGTTATTAGGAGGAGATTCTTCACTAGAGGGCAATGAGGCCCTGGCATTGCTGCCCAGAGCTGTGAGTGCCCCATCCCTGGAGGTACCCAAAGCCATGGAACAGATCCTGAGCAGCCTGAGCTGGTGGGGGCAGCCAGCCCTCAGCAGGGGTGGGGCTGAGTGGGCTGTAAGATCCCTCCCAGCCCAATCATGCTGTGGTTCTACCACTGTAAGATCTAACCACGCATCTGTGCCCAGAATACCAGTTATAGACATGTACCACATCTATGTACAGCAGAGGACTATCAGTTCTCAAGACCTCTAACCTAACAGTGCACCTTGCAGACTGCCCCCCCGGCAGGTGCACTGTTAGGTTGGAGCTCTGTTTCACTGCTGATGTTGAATATTGAATGTACGAATGTGCAAATGGTTAAAAGCAAATTGCAGTGCAATAGCTGCTTGCTATGTGTGTGCATTGCATTCTGATGCTGGGGTGAGAGTTCAACCCAGGGCTGACTGAGCTGCCCCATCCTTGCAG
Seq C2 exon
ACCTGGATGAGTGCGAGACCGGCGAGTCGTGCTGCTCCCAGTTCTGCATCAACTACGTGGGCAGCTACGAGTGCACCTGTAGAGCAGGCTTCCAGCCCAGTGCCGATGGCTGCAGCTGCGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009458:ENSGALT00000015394:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=76.6),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]