RnoINT0003700 @ rn6
Intron Retention
Gene
ENSRNOG00000024536 | AABR07032338.1
Description
NA
Coordinates
chr18:61759289-61761455:-
Coord C1 exon
chr18:61761420-61761455
Coord A exon
chr18:61759523-61761419
Coord C2 exon
chr18:61759289-61759522
Length
1897 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
3' ss Seq
GATTCCTATCCTGTGCACAGGGA
3' ss Score
7
Exon sequences
Seq C1 exon
GGGGAGAGAGGAGCACCTGGGCCCCCAGGGTCTCCG
Seq A exon
GTAAGTTGAATTGTCTGTCCTGCTTAGCCAGTGGGTGTGGCTCTCAGGGGCGTGGCACTTGTAAAATGGTAGAGTGGGACTGGTGAGATGGCTCAGTGGGTAAAGGCACTTGTCACCAAGGCTGATGACCTGAATTCAGTTCCAAATGGTGAAAGGAAAGAACTGACTCCCACAAATTGTCCTCTGACCTCTATAGGGGTGCCATCCTGTCCCCTAACAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATCTCTCAAGCAGTCAGGTCTATGGTTAGGAGGAAACTTGTAGATGCATTAATCAGCTGGTTTAGATTTTTAAAATTTGTTTTCTGCTATTACTTTTGCTCTTCTCTTGGATACTCTTTACATGAAATCTCTCCTCTGAAGTCCACTATGTGAGGAACCCATTTCCAAAGGCATCATAAGATGTTTGAAAGACGGCCTGAGGAGGAGGCTTAGTTGGGATAGTGCAAGGGGACCTGAGTTCAGTCCCAAGAATCCATGTGAAAAAGTTAATGTTGACGGAGTGCCCTTGTAATCCCAGCAGAGATAGGGGGATCCCTGGGGAATAGAATTGGCATTTCCAGGATATTAACAATAGAGCCTTTCTTTTAAAAGGAAAAAAATTGTGGGCAATGCCTGAAGAATGTCAACCAAGGTTGGCTTATGGCCCCCATACACACCTGCACACAGACACACAGACACACAGATACACAGACACACACACACAAACTAGAATATATTGTCAGATGACCACTGCTCCAATAAAAGATAAAAAAGGACTCTCTGGGATTAAGGAGAAATTTGCTATACACACACACACACACACACACACACACACACACACACACAATATCTGAGAGATTAAAATGAGCAGAAATATGAGAAAATGCAAATAAGTATGCTACTTCTAGAAAAGTGGGTATGTGTTCTGAGGAAGGACCCAGAGGCCTGTGTTGCCACCTCACCTCTTATCCTATTAGCTTTCTAACTTTAGACTTTTACCTAGCGTCTGTTGGCATTTGTTCCTTATCTACACAGCGGGCTATGATTCGCCATAACACCCGTATGTGCATGGTGAGAGTCAGATGACATCAGAATGCTACGCCTCAGTGGGTGATGGCATCTCTTACAGCTTCTCAGGTACAAGCTGCCGAATGGCATCCATCTTGGATGTTGGTAACAATCATACCTTTTAAATGCTCATGGACTCACATGCTTAAATGCTTTGAGATTTTTCTGCAGACCATGCTGTTCAGCACTGCATGAAAATTAAAGCTTACTGAATATTATATATGATGAAGAATGTCCAATAATAGAATTCGGAAGGCATGATGTGGATCTTCCTAGACCATGAGGGATAACACACTCTCAGTTTCATTTTGTTGTTCATTTTACAAACATATTAACAATTTCATTTTTTTAAAGAAGAACAGAAAACAGAACTATTCTTTCTAATCCCTTTGCATCTCATTTAAATGTCCACCTATGAGCCCATTGGAAACCTGTGGTGTCGAGTCTGCATTTTACTGATGGGAAAAGCTTAAACACATAGAAATCAGGTAATTTGCCATGGTCACACAGCATGGAAGAGGTTGGCTCAAATCCAGCAGGCCCTCACCCGCTGGACCATTGCTCTGACTTCCAGGTTTCTTCAGAAACTCCCCCTGAGAAAGGAGAGGTGACTGTGCCACCAGTGTCACGGGTGAGGAAAGGGTCCCAGGCTGCTCATACAGTCCTTAAATCTATTTAGGTTACAGAGATGCTTAGAAGGTAGTCACTCACAAGCAACAGGACTCATGGGTAGCAGAACTACACAGGATGCCGCTGTTGTCATGAGTGACTTCACAGCTTTGATTCCTATCCTGTGCACAG
Seq C2 exon
GGACCCCCAGGTTCTTTTGACTTCCTGCTGCTGGTACTGGCGGACATTCGAAATGATATCGCAGAGCTACAGGAGAAAGTGTTTGGACATCGGATTCACTCTTCTGCAGAGGACTTCCCCCTACCTCAGGAATTCTCCAGCTACCCAGAGACCCTGGACTTTGGGTCTGGAGATGACTATTCCAGAAGAACTGAAGCAAGGGACTCTGAGGCCCCGAGAAACTTTTATCCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024536:ENSRNOT00000034069:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.870
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(28.2=100)
A:
NA
C2:
PF0139113=Collagen=PD(12.8=6.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]