RnoINT0005623 @ rn6
Intron Retention
Gene
ENSRNOG00000022033 | AABR07051507.1
Description
NA
Coordinates
chr3:14279957-14285311:-
Coord C1 exon
chr3:14285149-14285311
Coord A exon
chr3:14280341-14285148
Coord C2 exon
chr3:14279957-14280340
Length
4808 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGGG
5' ss Score
6.35
3' ss Seq
GATGTCACTTATTCCTGCAGTGA
3' ss Score
7.08
Exon sequences
Seq C1 exon
ATTCAGGCCCAAGAGTTGTCTGAAGAACAAAACTGGTTCTCAAATGTGTATTCGGAAGTCGTGTCAAAGCATTTTTCAAAATTAGAAATAATGCCAATCGTCTATGACAACAGCTCTCTCTTTGTTCACACTGACAAGCCTGTGTACACTCCAGAACAGCCTG
Seq A exon
GTAGGGTGTATGATGCTTGCTTCAGGGGAGAAAATTGACAGAAATATGTGTAACATCTGGAATTGAGTGGAAACAATTTCAACTTAAGAGAAACTCAAATCCCAGGATGTTTATACTCTCCAATAACATTTTCATTTTTAACTTATAGAGGAACTTCTAAGTAAATCACAAAATTAATGATCATTTAATCTGCCCTATTTAAAAAAATGTTTATCAAAAATACAGAAGACATAATTGCAAATACAACTTTGGCACTGGGAAATAGATGCACTTAAAATCTTGTTTATAAAACATTCTTGGGGGCTGGAGAGATGGCTCAGTGTTAAGCTCATTGACTGATCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTGATGGGATCTGATGACCTATTCTGGTGTGTCTGAAGACAGCTATAGTGTACTCATATATAATAAAATAAGCAAATCTTTAAAGGAAAATTCTCAGATTCAGTAGCCAGTCATGTTAGAAAAAAGAAATCTAAAAGAAGAGAGCTCTGTGTTTCGCAGGGATTAAAGTACATCTTAGGAGTGTCTAGATGCTGATTCTCTATGTTTACCCACCTAAGAAAGGATCCGTCAAGCATGGTCTCATATTTTCACTGTTTCTGTTAGAGGGGGAGCAGCAGAAGTCATGAACTTCATGACTGAGTTCTTTCCACCCACAGAACCGAAAATAAGACATAGAAAAATGTCAACATTGTTTATAAAATATTCTGCTTTTTTTCATCCGCCACTTGTCATCACTAGCTTCGAATCCACAGTTAGAGATGGATTTATGCAAGGTCCGCATGCAACTGGAGGAACCTAGGATGCTTCATTGGTGGCACTCTGTGTGAAGGACCAACAATGGCAGGCAGAACTGCCCTGTTTTGCTTTGTTCTGTCTTTTAACTTTGTACATAGTAGCTATCTCCTAATTTTGGTGGACGCTGATGATGTCAGTAGAGAGGTAGACTGGGGCTGTATGACAGCCACCACACCACTCAGCAAGAGCACAGGCTACACTGGCTGAGCAAGGAAAGACCTAGAAAGGGTGAGGATGTTGCCACCAGCTTAGCCAGAGTGTCATTGCCAGAATCACTGCTCTGACCCCAACAAGACAATTTGGTGTATGAGACCATAACTTCTGCCCATAAGAATATTCTAAAGTCCTTTATCCTATTGATGCATGTAATGTGAAGATACGTGAAGGATTAAAGCTTAAGCATCTTAGAATAAAGACTTAAGTCTTGGGGCTGGAGAGATGGCTTAAGAGCATGGTCTTCCAAAGGACCAGGGTTCAATTCCCAGCACCCACATGGCAGCCCACAACTGTCTGTAACTCCAGTTCCACGGGATCTGACACCTTCTCATAGACATGCATGTAGGCAAAACAGTAATGCACATAAAATAAAATTAATAAATTACTTAAAAAAAAGACTCAAGTCTCTAAGGCTTCCTTAAATAAAGGGCCTTAGAATATTCTTGAGAGTTCTTCCGTTCTGTAAGCCTATGTCCTGACCTCTTCCTCAGCTCCCTTATCTACTATGCCCACCTGACCCCTAACTGTGGACTCAAGTCAAACTGACCTCAGCTCAACTGCTTTTCCTACCGTTTTCTCATCCATATGGAAGTGGTGAAATGTGCTGTTACTTCTGCTTAGAACACTCTTATCCCTTTCTTTGCCTCCCGTAGGAGCCATCTTACAGACAGATCCCTGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGGCCCTGGGTTCGGTTCCCCGCTCGGAAAAAAAGAAAAAAAAACAGACAGATCCCTGCAGGACCCTGTACTTAGAGCTTGCCCGGCCACCCTCCACCCCACCCCACTCACATCTTCACACACTCTGTCACCCAGGGCCTCCTATATCCCAGGCAAGCACTCCATCTCTGAGGCTTGACTTGTTCAGCCCTCTCTTGTTCTCTCAAAAACATGTAGGCAGATGTAATAAACATGGACACTGTGAGCAGTGATGTGTGGTAGAAGAGCCACAGGCTTGAGAAGGAATGAGGAGAGAGATTAGGAATCATTCTAGCGATTCCTAATGCCAGGTTAGAAACTGCAAATAACTGGCATTGAAATAATGAGGGCAGTGTAAACATGTTCCTTCTTTTGTGCTGAGTCAAGTGGAAACTGTTTCTTTGTATCTGGAGTACCCTGGTGGAGACAATGTTCCCATGTTTACTAATCAGCTAAAATTTAAAGGTCAAGCTAACCCTGAACAGAGGAAGCCAGCACTGAGAGGAGACCACAGTTTGGAAATTCAGGACCTGTGATCTTAGCTTTGTCCACATGCTGCTAACAGTTCTTTCCTAATAACTAGACGGGGAAGGTGGATTTGTCCCCAGTCAGGAGGGGACATTTGAGATAGATAACATGGAAGGAAGGAGAGGACAGGATGTAGGGGACTTAACTGATCATAAATTTTACTTTGTTACCTTGGTAAAGTTTCATTGATGCTTCTTGGTAGAGTTTACCAAGTGCTGGCAAAGAGTGGAAACAGCGTTGGGCTTATGATACTATTTCTATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAAGACTTGGCTGTGAAATAGTTTGAGAACCCTTGAAGAATGAAATTGTGTCACTGTGTCCCCAAAGAGCTGAGTTAGAAATTCCACCATGTAGCTTTGTAGTTTAGGCAACCACATTATTGAGATTTCTGAGACATTCTGCCTTCTGGTCCACACTGTACCCTGAATTGTAGGTAGGGTGTTGTGTTTTAGATGTGCCATTTGGGACTGGGCATCCCATGGTCATGTAATCTCTGAGCAGCTGATATGCCAATATAGATGAGGGAAATTTTAAAAGGCCTCAATCCTAGACGAAGAGCTACAGCAGTCAGTCAATGGCTGATGAGACTCTCCCAAGTTGACAACACTAACCATAAACGTGTTCTGCTAACTTTGTGGAGGAACACTTACCAGCCCTCCAAATGAGCATTCTTGTATTAAAGAATTGTATTCGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAGATCTGATACCCTCTTCTGGTGTGTCTGAACACAGCTACAGTGTACTCATATATAATAAATAAATACAAAAAAAAAAAAAGAATTGTATTCAGTGAGTTCCAATGCAATGTGGTAAACAACTAGACTTGTGAAAAAGTCTAGAGCCTTTTGTGTCCTGTCCACACAGAAGTCACCAAGCTGTTAAGCACCTCTACTCCCAGCCTTCTGAGTGGAAAACAGGTTATAAAGGCTCTCCCTTGGAAGACAACCCTGTGTGTTTAACATTCCTGGTTTCCCAAGTGCTTACCCATGAGCACAAAGAGCTACAGGTCTCCTGCAGAGACAGCCTTCTGTCCAAGAAAGATTAAGACAAAAAGTGGTTTTGGATAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGTATAATAATAGGAAGGGGTAGAAATGGTGCAATTATACTATTCATGCTTGTAATTCCCCCAAAATCAGAATGTTAAGAAAATATTGAACACAATAAACAAAGACAAAGAAGATATGTTAAGGACTCAAATTCAAACTTGTAGAGATTAAAAACTATACTGTCCGAGATAAAAAAAATATGTCAACATTCCACTAATGCTTTTTTCCTGTGAACCTTTTTTTTTTCTTTTTTCTTTTTTTCGGAGCTGGGGACTGAACCCAGGGCCTTGGAAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCTGTGAACCTACTTTTAAAATGCAAAAATAAGCAAGCAAATTTAAAAAACAAATAAGCTTTGATACACATACTAAATTTAAAAAGGAGAAGTCCTGGTAGGGTATTGGGGTGTGGCTCTAAGGTCAGAACATGGACGGCAGATGTAGGAGGGTTGTAAAGCACAGGCTAACCTGGGCTACGTAGCAAGTAAACGAAGGCTTAGTGATGTGCCTTCTGTGACAGAATGCTTGCCTAGTGTGGTCAAGGAGACTAGCAGTTCTGAGATGCTGCTACCGTTCTTTTAAAGAGGAGGGAGCAATCATAGGACCTAGTGCACAAATGAAACACAGTCACACGATCATGGTAATTTTGCAGGAAGAACTAATTTGGAGCCCTGTTAGTTTTCATAGTTGGGAGGGTGCATGCTATCTGAACCAAACTCCCAATTTCCCTTTAAACTCTTCAACCCTGAGGTAAGGTAGTATTGGATGCTTTCATATAACCCACAGGAGATCTCATTCTTTTGATATTATGAAACTCTGATAAATGGTGGCCTAATTGCAGATGCACGTCATTTTCTACCATATACATGTTCTCAGGAGGTTTTACATACGTATTTTTCATGCAGTAAACTATCTTATTCAGGAGAAGTAACTCATAAGGATTTGCTTTAAAAGGAAGGAACCTTTAGTAATGTATATGTTTACCAAACATTTTCCTTTAAATGTTTTTATCTATAGGTTATATAGCTTTTAACGAGATTTAGCTCATTAAAGATGTGTCTAAAAACATATATTGCTTTATGAACCCTTGAGAATGCCATCCAGTGTATTTTAGATCATTTTCACCCTGAGGGTGTTTGTTTCAAAAATTAGATGAGTCCTCGTTTAACAAGATGTCACTTATTCCTGCAG
Seq C2 exon
TGAAGGTTGCCGTCTACTCAGTGGATGATGACCTAGAGCCTGTCACCAGAACAACAGTCTTGACTTTCATAGTATTTACTTCTTCTCGATCACTCGGGACACTTTCCTCACAGATGTACGGACTGAGAAGAGCAGTTCTCAGGAGACAGCACTCTCTTGGAGGGCTGCCTGCCCTAAGAACTAACTCTTCATAAATGCTTGCCTGCAGTTCTGTGTTTCCATCCAGCATTGAAGCCACATGGCTCTCCTGTCCAGTGTGGGCTTCTTTCAACCCCAGCTTCCAGAATCGTGGGCTAAAATAAGTCTGTGTTCTTTAAAGCTTACCTGGCACCAGATACTCTTTTATAACAACAAAAAATAAACTAAGGCAGGGGTGGATTTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022033:ENSRNOT00000092874:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]