RnoEX0002978 @ rn6
Exon Skipping
Gene
ENSRNOG00000022033 | AABR07051507.1
Description
NA
Coordinates
chr3:14279957-14288816:-
Coord C1 exon
chr3:14288624-14288816
Coord A exon
chr3:14285149-14285311
Coord C2 exon
chr3:14279957-14280340
Length
163 bp
Sequences
Splice sites
3' ss Seq
ATTTTGTTCTTGTCTTACAGATT
3' ss Score
11.47
5' ss Seq
CTGGTAGGG
5' ss Score
6.35
Exon sequences
Seq C1 exon
ATATATCATTTCAACCCCAATTGTCTTCCGAGTTGGAGCTCCTGAAAATGTTACAGTCCAAGCCTATGGCTACACCGAGGCATTTGACACAACCATCTCTGTGAAAAGCTATCCTAATAAAAATGTTAATTACTCTTCGGGCACTGTTGAATTATCACCAGAAAATAAATTCCAAAACTCTGCTATCTTAACA
Seq A exon
ATTCAGGCCCAAGAGTTGTCTGAAGAACAAAACTGGTTCTCAAATGTGTATTCGGAAGTCGTGTCAAAGCATTTTTCAAAATTAGAAATAATGCCAATCGTCTATGACAACAGCTCTCTCTTTGTTCACACTGACAAGCCTGTGTACACTCCAGAACAGCCTG
Seq C2 exon
TGAAGGTTGCCGTCTACTCAGTGGATGATGACCTAGAGCCTGTCACCAGAACAACAGTCTTGACTTTCATAGTATTTACTTCTTCTCGATCACTCGGGACACTTTCCTCACAGATGTACGGACTGAGAAGAGCAGTTCTCAGGAGACAGCACTCTCTTGGAGGGCTGCCTGCCCTAAGAACTAACTCTTCATAAATGCTTGCCTGCAGTTCTGTGTTTCCATCCAGCATTGAAGCCACATGGCTCTCCTGTCCAGTGTGGGCTTCTTTCAACCCCAGCTTCCAGAATCGTGGGCTAAAATAAGTCTGTGTTCTTTAAAGCTTACCTGGCACCAGATACTCTTTTATAACAACAAAAAATAAACTAAGGCAGGGGTGGATTTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022033_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCGAGGCATTTGACACAA
R:
ACTGCTCTTCTCAGTCCGTACA
Band lengths:
258-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]