BtaEX6036261 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012210 | C5
Description
complement C5a anaphylatoxin precursor [Source:RefSeq peptide;Acc:NP_001160088]
Coordinates
chr8:112321473-112329464:-
Coord C1 exon
chr8:112329272-112329464
Coord A exon
chr8:112326561-112326723
Coord C2 exon
chr8:112321473-112321543
Length
163 bp
Sequences
Splice sites
3' ss Seq
ATCAACATTTTCTTTTACAGATA
3' ss Score
10.85
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
Exon sequences
Seq C1 exon
GTATGTCATTTCAGCACCAAAAGTATTCCATGTTGGAGCATATGAAAATGTTGTAATTCAAGCTTATGGATACACTGAAGAATTTGATGCAACAGTCTCAATCAAAAGCTTTCCCGACAAAAAAGTTACTTACTCTTCAGGCCATGTTACTTTATCTGCAGAAAATAAATTCCAAAATTCGGCTACCTTAACA
Seq A exon
ATACAACCCAAACAGTTGTCTGAAAGACAAAGCTCCGTTTCACACGTGTATCTGGAAGTTACATCAAAGCATTTTTCAAAAGCAAAAAAAATGCCAGTAACCTACGACAATGGATTCCTCTTCATTCACACAGACAAACCTGTGTACACCCCACACCAGTCAG
Seq C2 exon
TAAAGGTTAGAGTTTATTCACTGAATGATGACCTGAAGCCGGCCAAAAGAGAAACGGTCTTAACTTTCATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012210-'2-3,'2-1,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0183514=A2M_N=PU(16.8=29.1)
C2:
PF0183514=A2M_N=FE(24.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCACCAAAAGTATTCCATGTTGG
R:
AGACCGTTTCTCTTTTGGCCG
Band lengths:
242-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]