RnoEX0015722 @ rn6
Exon Skipping
Gene
ENSRNOG00000018899 | C5
Description
complement C5 [Source:RGD Symbol;Acc:2237]
Coordinates
chr3:14212609-14225323:-
Coord C1 exon
chr3:14225131-14225323
Coord A exon
chr3:14216636-14216798
Coord C2 exon
chr3:14212609-14212679
Length
163 bp
Sequences
Splice sites
3' ss Seq
TTCCGTGATTATTTTTACAGTTA
3' ss Score
6.47
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
Exon sequences
Seq C1 exon
CTACGTCATTTCAGCACCCAAAATCTTCCGGGTCGGATCATCCGAAAATGTCGTAATTCAAGCCCATGGCTACACCGAAGCCTTTGACGCAACGATCTCTCTGAAAAGCTATCCTGACAAAAAAGTGACCTACTCTTCCGGCTATGTTAACTTGTCGCCGGAAAACAAATTCCAGAACTCAGCACTGTTGACA
Seq A exon
TTACCGCCCAAACAATTTCCCAGAGATGAAAACCCAGTCTCTCACGTGTATCTGGAAGTTGTGTCAATGCACTTTTCGAAATCGAAGAAAATACCAATAACCTATGACAATGGATTTCTCTTCATCCATACAGACAAACCTGTTTACACTCCAGACCAGTCAG
Seq C2 exon
TAAAGATTAGAGTCTACTCTCTGAGTGACGACTTGAAGCCAGCCAAACGGGAGACTGTCTTAACTTTCGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018899-'2-3,'2-1,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.003 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0183514=A2M_N=PU(16.8=29.1)
C2:
PF0183514=A2M_N=FE(24.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCACCCAAAATCTTCCGG
R:
AAGACAGTCTCCCGTTTGGCT
Band lengths:
244-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]