DreEX6014130 @ danRer10
Exon Skipping
Gene
ENSDARG00000021004 | c5
Description
complement component 5 [Source:ZFIN;Acc:ZDB-GENE-120510-2]
Coordinates
chr5:62814495-62815952:-
Coord C1 exon
chr5:62815757-62815952
Coord A exon
chr5:62815507-62815660
Coord C2 exon
chr5:62814495-62814565
Length
154 bp
Sequences
Splice sites
3' ss Seq
TTCCATTTTCCTTTTCACAGATA
3' ss Score
10.36
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
ATACCTAATTACTGCACCTAAAGTCCTGCGGCTCGATGCCTCAGAAACTGTTGTCGTGCAGTTGTTTGGTTTTGATCAGGAAACTACAGTTCATCTGCACCTGAAGAACACGTTAGCAGTAGGCAATAAAGAATATGACTATCAATCCCTGAAGCTCAACGCCGCGAATAACTATCAAGCTTCAGCGACTTTACGG
Seq A exon
ATATTAGCAAAAGATTTCCCCAAGGAGGACACATCTGTCTACCTTCAGACGATTTCTTCTGCTTTCACTGATAATGTTAAAATCCCGGTCACTACAGTCAATGGTTTTCTCTTTATCCAGACTGACAAACCGCTTTATACACCCGAACAAGAAG
Seq C2 exon
TACAAGTGCGTGTTTACTCCCTCAACGAGGAGCTGAGGAAATCTGCACGAACCGTCACTCTTACATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021004-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF065166=NUP=PU(57.8=71.2),PF0183514=A2M_N=PU(16.7=30.8)
C2:
PF065166=NUP=FE(35.9=100),PF0183514=A2M_N=FE(24.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAAAGTCCTGCGGCTCGATG
R:
GTAAGAGTGACGGTTCGTGCA
Band lengths:
243-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]