GgaEX6015513 @ galGal3
Exon Skipping
Gene
ENSGALG00000001565 | C5
Description
NA
Coordinates
chr17:9043834-9045520:-
Coord C1 exon
chr17:9045328-9045520
Coord A exon
chr17:9044514-9044676
Coord C2 exon
chr17:9043834-9043904
Length
163 bp
Sequences
Splice sites
3' ss Seq
CTTTAACTGTTCTCCCCCAGCTT
3' ss Score
7.66
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GTATGTCCTTACAGCACCAAAAGTCTTCCGAGTTGGGACATCTGAGAAAGTCGTAGTTCAAGCTTTTGGCTATGAGAAGGAATTTGCAGTCAATCTTGCCTTAAGAAGCTTTCCAGATAAGCTTGTTGCTTATTCTTCAGGCCACATTTCTTTAAATCCAGACAACAACTTTCAAAGTTCTGTAACTGTAACA
Seq A exon
CTTCAGCCAACAGATTTAGCTGGCCCAGAGGACTCAGTCAAGTATGTGTATTTGGAAGCTGTTTCTCCACATTTTACTGGTTTAAAAAAAGTTCCTGTTTCCTATGAGAATGGATTTCTTTTTGTTCACACAGACAAACCAATTTATACTCCAGATCAATCAG
Seq C2 exon
TGAAAGTCAGGGTTTACTCTCTGAACGAAGAACTGCAGCCAGCTCGGCGAGAAACTGTCCTAACTGTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001565-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0183514=A2M_N=PU(16.8=29.1)
C2:
PF0183514=A2M_N=FE(24.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCACCAAAAGTCTTCCGA
R:
GTTAGGACAGTTTCTCGCCGA
Band lengths:
247-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]