MmuEX6100799 @ mm10
Exon Skipping
Gene
ENSMUSG00000035875 | AI182371
Description
expressed sequence AI182371 [Source:MGI Symbol;Acc:MGI:2138853]
Coordinates
chr2:35089139-35098080:-
Coord C1 exon
chr2:35097888-35098080
Coord A exon
chr2:35095761-35095923
Coord C2 exon
chr2:35089139-35089209
Length
163 bp
Sequences
Splice sites
3' ss Seq
ATTTTGTTCTTGTCTTACAGATT
3' ss Score
11.47
5' ss Seq
CTGGTAGGG
5' ss Score
6.35
Exon sequences
Seq C1 exon
ATACATCATTTCAACCCCAATTGTCTTCCGAGTTGGAGCTCCTGAAAATGTTACAGTCCAAGCCCACGGCCATACTGAGGCATTTGACACAACTGTCTCTGTAAAAAGTTATCCTGATGAAAATGTTCGTTACTCTTTCAGCACTGTTAATTTATCACCAGAAAATAAATTCCAAAACACTGCAATCTTAACA
Seq A exon
ATTCAGGCCAAACAGTTATCTGAAGGACAAAACTCATTTTCAAATTCGTATTTAGAAGTCGTGTCAAAGCATTTTGCAAAATTAGAAATCGTGCCAATCATCTATGACAATGACTCTCTCTTCGTTCAAACCGACAAGTCCGTGTATACTCCACAACAGCCTG
Seq C2 exon
TAAAGGTTCGTGTCTACTCTGTGAATGATGACTTAGAGCCGGCCACCAGAGAAACAGTCTTAACTTTCATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035875-'5-12,'5-8,6-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.229
Domain overlap (PFAM):
C1:
NO
A:
PF0183514=A2M_N=PU(16.8=29.1)
C2:
PF0183514=A2M_N=FE(24.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCCCAATTGTCTTCCGAGT
R:
AAGACTGTTTCTCTGGTGGCC
Band lengths:
243-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types