RnoINT0005719 @ rn6
Intron Retention
Gene
ENSRNOG00000024700 | AABR07052443.1
Description
NA
Coordinates
chr3:54735528-54735974:+
Coord C1 exon
chr3:54735528-54735642
Coord A exon
chr3:54735643-54735800
Coord C2 exon
chr3:54735801-54735974
Length
158 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAT
5' ss Score
7.84
3' ss Seq
TGTTGATATCACACCCACAGGCC
3' ss Score
7.51
Exon sequences
Seq C1 exon
GACTGCTCTGCACTTTGCCTGTGTCTATGGCCATCCAGAGGTGGTGACTCTCCTGGTGGAAAGCAGCTGTGAGATCAGTCCCAAGGACATTAAAGATGCCACACCTCTAATTAAG
Seq A exon
GTATATTATAGCCATCAGCTTCAGGTGGTATGAATTTGAAATACACCATTAGATAAAAAGATGAAACTGTGCTATTTTAAAAGGAACTAAACATTGAAGCCCATGGAAGGCCGATCTTGAGTTGTTTAGCAATCTGTGTGTTGATATCACACCCACAG
Seq C2 exon
GCCTCCCAGTGCAGACAAACGGAATGCCTCAATATTCTCTTGAAGCATGGCGCTGACCCAAACATTATGGACTGCAGTGACAATACTGCCCTGCACTACGCTGTCTACAACGGGGACATCGAAACAGCCACTAAGCTGCTTGAATACAAGGCCAACATCGAAGCGATAAACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024700:ENSRNOT00000034341:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(31.9=74.4),PF0002325=Ank=PU(21.2=17.9)
A:
NA
C2:
PF0002325=Ank=PD(72.7=41.4),PF127962=Ank_2=PU(29.0=46.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCCAGAGGTGGTGACTCT
R:
CGCTTCGATGTTGGCCTTGTA
Band lengths:
250-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]