RnoINT0008453 @ rn6
Intron Retention
Gene
ENSRNOG00000062252 | AABR07072853.4
Description
NA
Coordinates
chr3:10386365-10386878:-
Coord C1 exon
chr3:10386759-10386878
Coord A exon
chr3:10386492-10386758
Coord C2 exon
chr3:10386365-10386491
Length
267 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
3' ss Seq
TACCGCGCCCTACCACCCAGACA
3' ss Score
4.28
Exon sequences
Seq C1 exon
ACCTTGATGAGTGCAGTGTGAGAAGCCTGTGTCAGCATGCCTGCCAAAACACGGAGGGTAGCTACTACTGTCTCTGCCCCTCTGGCTACCGCCTCCTTCCCAGCGGGAAGAACTGCCAGG
Seq A exon
GTGAGCCAGCCAGACCCAATCCACACTCCTCCCAGGATTAGGGACACACAGCATAGTGTCCCTGGGCTGTTCTCAGTCTGAACCTCACCCATGATAGGAGGAAATCCCTAAAAGACATGCCCTCCAAAGACATGCCCCTGGGAGCTGGAGAGGTGTTGGGGAGGGTCTCTCCTCGGTCTCTCCTTGGGGCTCCGCTGGTCTCTTTCACACGGCCTCCCTTGGTCTCCCTCTCTATCTTCCCATCTCCTACCGCGCCCTACCACCCAG
Seq C2 exon
ACATCAACGAGTGTGAGGAAGATGGCATCGAGTGTGGGCCTGGCCAGATGTGCTTCAACACCCGAGGCAGCTTCCAGTGTGTAGACACGCCCTGTCCTGCCACCTACCGGCAGGGCTCCAGCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000062252:ENSRNOT00000093281:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGAGTGCAGTGTGAGAAGC
R:
CTGGAGCCCTGCCGGTAG
Band lengths:
237-504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]