BtaINT0072453 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015235 | HMCN1
Description
Bos taurus hemicentin 1 (HMCN1), mRNA. [Source:RefSeq mRNA;Acc:NM_001192537]
Coordinates
chr16:68717677-68731326:+
Coord C1 exon
chr16:68717677-68717796
Coord A exon
chr16:68717797-68731199
Coord C2 exon
chr16:68731200-68731326
Length
13403 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TGTTTCTTGTGCTGTTGTAGATA
3' ss Score
9.38
Exon sequences
Seq C1 exon
ATATTAATGAATGTGAAAATACAGACACCTGCCAGCATGAGTGTAAAAATACCTTTGGGAGCTATCAGTGTATCTGTCCACCTGGCTATCAGCTCATGCTCAATGGAAAGACATGTCAAG
Seq A exon
GTGAGAAAACTTTGGGACATTTAGTGCTGCAACTTAACTTAAAACCAATATAGATAGCATAGTGTGAGAAATGTCTTTTTTTTGAATAATTATTCTTCTAGTTGATTCCTTTCCCTTCACATTCGCATGGGTCAGACTTATCTTTAATCATTGCTTTTGCAAGCAGGAAAAGCAGAAGGCGGCAATTAAGCAAAGGAAAATTTGAGAAACATTTTTGGTATGATCTTAGAAGAAGGCACACAGGAATGCCTAAATCAGTTCATATCATATATATTTAAAACTAAAAGGAACTAGATCTCTTCAGACACGTTTTACAATCCAGCTACGAAGAAAGGAGAAATGGGATGAATGCTCAGTAAATGTACTTCAGTGTTAGGCATTATTTTATACTTTGTTTTAGTGATCAGTGGGTGATTAACTCATTCATTTTTTGAATCGAATGATGAATACCAATCATTTTCTAGAAATTCTGGATGCAGTAGGTTAAAACAGGTGAATAATATACACTATTTCCTTTATGATCTTAGAGTCTAGTGGATACAGACATGCAAACAAGTGCTTAATCAACATACAAAATTCTATTACTAGGTGTTACAGCGGAGTTCTAGACAATATGTAGTGATGGCAGAAAGAAAAAAAAAATCAATCTCAAAAATGTGAAAGGAGCATTGTATTTTGATGAAATGTAGTATGTTGCAATGTATACTTAGAGAAAAAATGTATTAATTTACATAAATCATCAAAATCTAAGAAACTAATTCTATGGACAAAAAAAAAAAAAAACCTAAGAATATTATATAGGTCTTTAAAAGCTCTGAATTTTATTCATCTCTGTCCTGCATGAAAGACTTTCCTTTACAAAACATTTGCTAGGATGCAGCTCATGGAAATGTGTTCTGGAAGCAAGAACAGGACGGACAGTAGCTTCACCTGGGTTACTATGAGCCTCCCCACTCTTACTTACCCCATTCACCCAATATACTCCCTCAGAGCCCCCACTGATCATGTGAATGCAATAATAAACTCTGCTCCAGTCATCCTTCACCAAACATTTATGAAAAGCTTGCCCTAGGAAGAACATTTTACTAAGTTTTGAAATACTGGAATAACGTATCTACATTATAGTTTTCCATTTTTCTGAAACAACTGTTAGCTCATTTTAATCAGCAGTATAGCTTTGTCAAGAACAATGATTCGGACCCATTCTAGAGATGATAAAACCAATTCTCAGAGTGATTATGTGAGTCTCAGTGTCCTATAACCATCAAGAACAAGGGCAGGACTGGATCACAGATTTCATGATGTTTAGAATGGTCCTTGGTTTCTCCTGTGATGCTGTGAACACCAGTGATTGTAGTGTGGCAGCAGAGAGATGTAAGAGTGCTTACATTGTCCATAGCTTACAACTTTCTCCAGCTCTTCACCCCACGAATCCTTCTGAAGGGAGGCAGTGTACAACACTACCATTACTCTCTCTACAGGTGCACCAGGTATCAAGGAAGGAAGGGGATAGATACTGAAGCATTTGGAATAACCTAGTGGACTGCAAACTCCTTAGCCAGATTTTTAAGGGTTATATTATGTCATATTCTCATTAGAGGATTTTTTCTCCTTTAAATTATGCCAGTATGTTTTTTTAGTTGCCCTTTTCACTCATTCAGTTCAAAACATTTTTCCACTTTCACTTGTGCTCCAGAGAGTGGAAAATAATGTGCACAAATCAGAAACAGACATCATCTAAAATGTCTGCAATTTAAGCAAGTTACATATTTTTGTGATTTTATAAAAGGACATGAGAGAAAACAATTACAACCTTTAAAGAAGTCTCTACTCTAAAGAATAACTTGGAGTCTTTTATGGCTTTAGAAAGTGTCTGAGGCATTTATGAGGAACAAAAGACTATGTTTCATTCCCAGATGAATTTTTGAAGCTTTATACATTAGTGTTAGAGATATCAATAATAAAAGGGATATTAAAGTGAACTTGACATTGAACATTGACAGAAACTAGTCAAAAGTAGAAGTCATCAGATTGCAAAATGAAAACCAAAAACATGACCAAGTATAGTTTTCCCCAAAACCAGAGAGGAGAAACTGAAAATTTTGTATGCTAATGTTAAACCCCACTAATCTAATGCCAATCCCAGAGAAGAGCAATGCCAAAAATGTTCAAACTACTGCACAATTGCACTCATTTCACATGCTAGCAAGGTAATACTAAAAATCCTTCAAGCTAGGTAAGGCTTCAATAGTACATGAACTGAGAACTTCCATATATACAAACTGGATTTAGAAAAGGCAGAGAAACCAGAGATCAAACTGCCAATATCTGTTGGATCATAGAAAAAGCAAGAGAATTCCAGGAAAAAAAATCTACTTCTGTTTCACTGACTATGCTAAAGCCTTTGACTGTGTGGATCTTGGCAAACTATGGAAAATTCTTAAAGAGGTGGGAATACCAGACCACCTTACCTGCCTCCTGAGAAACCTGTATGCAGGTCAAGAAGCAACAGTTAGAACTGGACATGGAACAATGGACTGGTTACAAATTGGGAAAGGATTATGTCAAGGCTGAATATTATCACACTGCTTATTACTTATATGCAGAGTACATCATGTGAAATGCCAGTCTGGGTGAATCACAGGCTAGAATCAAGATTGTCAAGAGAAATATCAGTAAGCTTAGATAAGCAGATGATGCCACCCTTATGGCAGAAAGTGAAGAGGAGCTAAAGAGAGCCTCTTGATGAAGATGAAAAAGGAGAGTGAAAGTGGGCTTAACACTCAAACAATCAAAATCTTTTTTTTTTTTTTTATTTTATTTGGAGGCTAATTACAATATTGTATTGGTTCTGCCACACATCAACATGAATCTGCCACGGGCATACACGTGTTCCCCATCCTAAACGCCCCTCCCACCTCCGTCCCCGTACCATCCCTCCGGGTCATCCCAGTGCACCAGCCCCAAGCATCCTGTATCAATCAAAATCTTAAGATCATGGCATCCGGTCCCATCACTTCATGGCAAATAGATGGGGAAACAAAGGAAACAGTGATAGATTTTATTTTCTCGGGCTCCAAAATCACTGTGGACAATGACTGAAGCCATGAAATTAAAAGACACTTGCTCCTTGGAAAAAAAGCTATGACAACCTAGAAAGAGTGTTAAAAATCAGATATCACTTTGTTAACAAAGGCCCACATAGTCAAAGCTATGGTTTTTCCAGTAGTCATGTAGGGATGTGAGAGTTGGACCATAAGAAGGCTAAGTGCTGAAGAATTGATGCTTTTGAACTGTGGTGTTGGAGAAGACTCTTGAGAGTCCCGTAGACTTCAAGGAGATCCAACCAGTCAATCCTACAGGAAATCAGTCCTGAATATTCTTTGGAAGAACTGAGCCAACTCATTGGAAAAGACCCTGATGCTGGGAAAGACTGAAGGCAGGAGGAGAAGGCAACAACAGAGGATGAGATGGTTGGATGGCATCACGAACTCAATGAACATAAATTTGAGCAAGCTTCAGGATATGGTGGAGGACAGGGAAATCATGGGGTTGCAAAGAGTGGAACACAACTGAGTGACTGAACAACAATCTAATTCTAAAAGTGTAAAAATACTCTATGTTGGCATTACCTTCAAAATGAATTATCTATCCAAGTTTTTAAGAAGCAATTCATGTCTACTGAGAATCTGAATTACTTTATATTCTCTATAAGTCAAATGTTTATTCTGAATTACTTTTTTAAATGTAGCCAGAAGCATTTGGTTAAATGCATTCATATATTCTAAAGCTGTTCCTGTGAAAGTTTTTCAACTGATCTTGGTATAATTTTCTTGTAGCAATAATATTTGTTATGAAAAGCCTATACTTTAATTTTTGATCACAATAATTTTTAAATAATATTTTGTAATTTTATATATTATATACAATTATTTAAATTAATCTTATGATATGTTATATAATTATATAATATCTTACAAAAACCAGATATTACCACACTGTCAGGTAACAAAAGATAGCCTGATTGCTCCACCTTTTCTGGCTACTTTTTTTTATGACTAGTGACTAAAATGAGTGAACAAAGTGAGCAGATTGAATGCCTTAAAGATACTTACTCCGGAAGAGATAGTGATAGAAGACAAAGAAGGGTTACCTTCTTAGAAGCTCAAATACTTTTTGAAAGCTCTTCTATGGGAAGTGTATATTATTATGGAGCTAGGGACAAACACTTTGTATATTAGATTCTGACATTCGATATATTCATATTCAGCCAATGGAAATATGTGATGAGGTAGCTGTTCTTCCTGTGTATAAATGTGTATCTAGATTCTGGCCTCCAAGCCACCATTGTCATAGGCCCTAACAGTCCACTGGCCCCGTGTTTCTGTATGAGTTCACTATAAAAATTAAAGCTAAAATGAAATTTGGAATATGGATGGGAGGGGAATGGGATTTTTTTATGATAGCAAAGATACATTTCTTTCACATTTTCCTAAAGGGCTTTTCACTTCATTCTGAGACAATTTCATTTTGTCAAGGAGATGGAACACTTCCAACAGATAAAAATCATAACTGGAAGTTGGTTTGCAGAGTCAAAAGGCAAGGTTTAAGATTTAACTGAAATAAAACATGGTTCTGTTTCATTCCTGGAGGAAAACTAATTCTATTGTAAAAGGAGTAATAGAAAGCACATTATGTCATTATCAAGTCCCAGCTCTACCCACCAGAGGGCAGACACCAGAAGCAAAAAAAACTACAGTCCAGCAGCCTACAGAACCAAGTCCAGAAATGCAGATCAGAACCTGCCCTAGAACCACCTGGTCCCTGGCCCTTTGGTGACAAAAGGGGAGTGTACTGCTGGGACACAGAGGACATCCCCCACGGAGGCCACTTCTCCAAGGTCAAGAAACATAACTAACCTTCCACATACATAAAAATAGAAATCTATACAAAGACTTCCCTGGTGGTACTGTGGATAGGAATCCACCTACCAAGGCAGGGAACACGGGTTTGGTCCCTGGTCCAGAAAGATTCTGCATGCCATGGAGCAGCTAAGCCCATGTGCCACAACTACGGAAGCCTGCAGATTCTAGGGCCCACGAGCCGCAACTGCTGAACTCACGTGCTGCAGCTCCTGAAGCCCATGTGCCTAGAGCCTGTGCTCTGCAATAAGAGAAGCCACCACGACGAGAAGCCCTATGCACCAAGCTAGAGAGTGGCCCCCACTCTCTGCAACTTGAGAAAGCCTGCACACACCAATGAAGACCCAGGGCAACCAAAGATATTTTTAAAAATAAAAAAGAAAGAAAAATCCCGGTGAAAGGAGATAACAGAGGATTATGTTCTAGACAAAGAAAAAGATAAACCCCCAGAACAACTAAGTGACATGGAGATAGGCAATCTACCTGAGAAAGAGCTCAGAGTACTGATTGTAAAGATGACCCAAAAATTCAGGTAAAGAATGGATGCACAGTGCAAAAACCTGTAAGAAATTTTTAGCAAAGAGTTAGAAAATACAAAGAACAGCCAAAAAGTTGAAGAATACAATAACTGAAGTGAAAACACCCTAGAAGGAATCAATAGCTGAATAAATGAGGCAGAAGGGATAGGTGAGCTGGAAGACAGAATGGTGGAAGTCAGTACTGCATAACAGAATAAAGAAAAAAATGAGAAGAAATGAGGGCAGTTTGAGAGACCTCTGAGACAATGTCAGATGCACCAACATTTGCATTATAGAGGTCCCAGAAGGAGAAAAGGGAGAGAAAGGGCCTGAGACAATATTTGAAGAGATAATAACTGAAAACTTTCCTAATGTGCAAAAGGAGACAGTAACCCAAGCCCAGGAAGTGCAAAAACTACCATTGAGGATCAACTCAAGGAGGCATGCCCACACACATTGTAATCAAACTGACAGAAAATATGAAAAGCAACAAATAACATATAAGGGACCCCCATAGGGCTATTGTCTGATTTTTCAGCTGAAACTCTGGCTAGAGGAGAGTAGCACATTATATTTGAAGTGATGAAAGTGAAAAACCTACATGCAAGATTACTTTACCCAGCAAGACTCATTCACGTTTTGACAGAGAAATCTAAAGCTTTACAGACAAGCAAAAGCCAAAGGAACTCATTACCACTAAACCAGCTTTACAAAAAAATGCTAAAGGAATTGCTCTAGACAGAAAAGAAAAGTCTACAACTAGAAACAAGCAAATTAGGAAATGGGAAAGCTCATTGGTAAAGGCAAACCTACCCAAAAGGTAGGAAATCATCCACATTCAAATATGATATTGAAACCAGTAATCATGAGAGGAGGAGAGTAAAACTTCAGGATACTTGAAGTGCATTTGAAATTAAGAAATCAGCAACTTAAAACAATTGTATGTATACCTAGACTGCTGTATCAAAACTTCAAGGCAACTGCAAATCAACTCTGTAATAAGTATATACAAAAAAGAAAAAGAAATCCAAACACTGAACATAGCCATCAAATCACAAGAGAACAAAAGAGGGGAAAAAATGACCTTCAAAGGCAAACCCAAAAGAATTAACAAAATGGCAATAAGAACATACATAGATAACCATCTTAAATGTAAATGGATTAAATGCTTGAGCCAAAAGACATAGATACAAATGAATGAACGGGTGCAAAAACAAGACCCATATATATGCTGTTGAAAAGAGACCCATTTCAGATCTAGAAGCCATGAAGACAAAGTAAGGGAATGGTTTAAGAGATTCCATGTATATAGAAATCAAAAGAAAGCTGGAGTAGCAACAGTTGTATCAGACAAAATAGACTTTAAAATAAACACTTTACAAGAAACAAAGAACTATACTACGTAATGATCAAGGAATCAATCCAAGAAGAAGAGACAGCAATTGTAAATATACATGCACCCATAGGATACACAATTGGACACATAGGAACACAATGCAAGAAATCATCTACATTTAAATATGATATTGAAACCAGTAATCATGAGAGAAGGAGATTAAAAATTCAGGATACTTGAAGTGCATTTGAAATTAAGAAATCAGCAACTTAAAACAATTGTGTGTATACCTTGACTGCTATATCAAAATCTCATATTCAAGGCCGTTAATAGACATAAAAGGAGAAATTAGCAGTAACACAATACTAGGGGAGGACTTTTAACACACCCCAGTTACCTCAATGGACAGATGATCCAGGCAGAAAATCAATAAGAAAACATAGGCCCTAAAAGACACATTAGTCCAGATGAACTTAATTGGTATATATAGAGCTTTCCATACAAAAGCAGCAGAATACAGATTCTTTTCAAGTGCACATGGAACATTCTCCAGGATTGACATGTGGTACTTATACAAGTACAATCAAAGTATGTCCTTGGCCACAAAGCAAGCCTCAATAAATTGAAGAAAACTGAAATCTTATCAAGCATCTTTTCTGACCACAGCACTATGAAATTAGACATCAACTACAAGAAAAAACTGCAAAAAACAGAAATACATGGAGGCTTAACATTGTGCTACTAAGTAACAAATGGATCACTGAAGAAATCAAAGAGGAAATCGAAAAAATACCTAGAGATAAATGAAAACAGAAACATGATGATCCAAAACATGGAACACAGCAAAGGCAGTTCTAAGAAAAAAGTTAACAGCTATACAAGCTTACGTCAGGAAACAAGAAAAATCTGAAACTACCTAACTTTACACCTAAAGCAACTAGAGAAAGAATAAAACAAAACCCAACGTTAATTAAAAGGAAAGAAAGCATAAAGATCAGATCAGAAGTAAATGAATTACAGAGGAAGAAAACAATAGTAAAGATGAGTGAAACTAAAAGGTGGTTCTTCAGAGAAGAATATATGTATGTATGTGTATAACTGAATCACTTTGCTATACACCTGAACTAAGAGAACACTGCAAGTCAACTATACAGTAAAATTTTTAAAAATAAAAATGTCAAAATATTAAAAGCAATAAATAAAAATAAAAGCTGATTCTTTGTAAAGATAAACAAAATTGATAAACCTGTAGCCAGACTCATCCAGAAAAACATGGAGAGAGGCCAAATCAATAAAATCATAAATGAGAAAGAAGTTACAGTCAACACCACAGAAATAAAAAGGCCCATACTATAAGCAACTATTTGTCAATAAAATTGACAACCTACAAGAAATATGCAAATTCTTAGAAAGGTACAATCTCCCAAGAGTGAAAAATGAAGAAAAAGAGAACATGAACAGACCAATTTTAAATACTAAAATTGAATCTGTGATTTTAAAAACTCCCCCAAAAGATACCATATCAGATGACTTAACAGGCAAATTCTATAAAGCTTTAATAGACTAGTTAACACCTAAATCTTCTGAAACTATTCCAGAAACTTGCAGAGGAAGGAATACTTTCAAACTCATTCAATGAGGCCACTGTCACTCCAAAACCAAAGATACCACAAAAAAGAAAAAATACATACAAATGTCACTGATTAATATAGATGCAAAAATATTAAACAAATTACTAGCAAACTGAATCCAACATTACATTAAAAGGATCATACACTATGATTAAAATTCCAGGGATGCAAGATTTTTCAATATCCACAAATCAGTGTGATACACCACAGTGACAAATTGAATTAAAAACTATATGATCATCACAATAGATGCAGAAACAGCTTTTGATAAAATTCAGTTCAGGTCAGTTCACTCAGTCATGTCCGACTCTTTGCGACTCCATGAACTGCAGCACAGCAGGCCTCCCTGTCTATCACCAACTCCCGGAGTCTACCCAAACTCATGTCCATTGAGTCACTGATGCCATCTAACCATCTCATCCTCTGTTGTCCCCTTCTCCTCCTGCCTTCAGTCTTTCCCAACATCAGGGTCTTTTCAAATGAGTCAGCTCTTCGCATAAGGTGGCCAAAATATTGGAGTTTCAGCTTCAGCATCAGTCCTTCCAATGAATATTCAGGACTGATTTCCTTCAGGATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGCTCAAAAGCATCAATTCTTCGGTGCTCAGCTTTCTTCACAGTCCAACTCTTGCATCCATACATGACCACTGAAAAACCATAGCCTTGACTAGATGGACCTTTATTGGCAAAGTAATGTCTCTGCTCTTGAATATGCTGTCTAGGTTGGTCATAACTTTCCTTCCAAGGAGTAAGCGTCTTTTAATTTCATGGCTGCAATCACCATCTGCAGTGATTTTGGAACCCAAAAAAATAAAGTCAGCCACTGTTTCCCCATCTATTTCCCATGAAGTGATGGGACCGGATGCCATGATCTTAGTTTTCTGAATGTTGAGCTTTAAGCCAACTTTTTCACTCTCTGCTTTCACTTTCATCAAGAGGCTCTTTAGTTTCTCTTCACTTTCTGCCATAAGGGTGGTGTCATCTGCATATCTGAGGTTATTGATATTTCTCCTGGCAATCTTGATTCCAGCCTGTGCTTCCTCCAGCCCAGCGTTTCTCATGATGTACTCTGCACATAAGTTAAATAAGCAGGGTGACAACATATAGCCTTTGACATACTCCTTTTCCTATTTGGAACCAGTCTGTTGTTCCATTTCCAGATCTACCTGTTGCTTCCTGACCTGCATACAAGTTTCTCAAGAGGCAGGTCAGGTGGTCTGGTATTACCATCTCTTTCAGAATTTTCCACAGTTTATTGTGATAAAATTCAATACCCATTTATGATATAAAGTTCTCCATAAAGTGGACATAGGGGGAACTTACCTCAACATCATAAAGCCATATATGACAAGCCCTATTCACAGCTAACATCCTACTCAATGGTGAAAAGTTGAAAGTATTTCCTCTAAGTTCAGATACAAGGCCAAGGATGAAGGATATCCACTTGGCACTTTTATTCAACAGAATTATGGAAGTCCTAGACATGTTAGAGAAGAAAGAGAAATGAAAGGAATCCAAATTGGAAAAGGACTAATAAAACTATCACTGTTTGCTGATAACATAATACTATACCTGCTGCTGCTGCTGCTAAGTCACTTCAGTCGTGTCCGACTCTGTGTGACCCCATAGACGGAAGCCGACCAGGCTCCCCCGTCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCTATTTCCTTCTCCAGTGCATGGAAGTGAAAAGTGAAAGTGAAGTCGTTCAGTCATGTCCAACTCTTCGCGACCCCGTGGACTGCAGCCTACCAGGCTCCTCCACCCATGGGATTTTCCAGGCAAGAGTACTGGAGTGGGTTGCCATTGCCTTCTCCGAATACTATACCTAGAAAATCCTAAAAACGCTACCATAAGATTACTAGAGCTCAGTAATTTCAGTACAATTGCTGGACATAGTTAATACACTGAAATACTTTCTTTTTCTATACACTAACAGTTACCATTGCATCAAAAGAATAAAATACCTTGGAATAAACCTACCTAAGGAGGCAAAAGACCTGTATTCTAAAAACTATGAGATGCTGATGAAAGAAATCAAAGATAACACAAACAGAAGGAAAGATATACAATATTCTTGGATTATAACAATCAATATTGTCAAAATGAGCATACTATCCAAGACAATCTACATGTTCAATGCAATTGCTGTTGAATTACCAATGGCATTTTTCACAGAATAAGAAATTTTAAAATTTGTATGGAAGCACAAAAGACCTCAAATAGCCAAAGAAATCTTGAGAAAGTGAAACAGAGCTGGAGGAAACAGGCTCCCTGACTTCAGACTATACTCAAAGCTATAGTCATCAAAATAATGTGGTACTGGCACAAAAATAGAAATATTGATCAATGGAACAGGAGAGAAAGCTCAGAAACAAACCAACACACCTATGGTCAGTTAATCTACAACAAAGGAGGCAAAAGCGTACAATAGCAAAAATACAGTTTCTTCAATAAGTGGTGCTGGGAAAACTGAACAAACACATGTAAAAGAGTGAAATTAGAACATTCTCTAACACCATAAAAATAAACTCAAAATGGATTATAACTTAAATGTAAAACCAGATATCATAAAACTTTTTGGGGAAAACATAGGCAGGATACATAAATAGCAGCAATATCTTTTTGGATCCATCTCCTGAGTAATGAAAATAAAAATTTAAATTAAAAAGAAAAATTTTTTAAATGAGATCTAAATAAACTTAAAAACTTTTGCACAGCAAAGGAAACCATAAACAAAATGTAAAAGACCAGCTACAGAATGGAAGAAAATATTTTCAAATGATGTGACTGACAGTGGATTAATCTCCAAAATATATAAACAGCTCGTTTTCCTAAAAATGGGCAGAAGATCTAAATAAACATTTCTGCAAAGAAGATATACAGGTGGCCAACAGGCACATGAAAAGATGCTCAGTATCATTAATGATTAGAAAAATGCAAATCAAAACTACAATGAGTTATCATTTCACACCACCCAGAATGGCCATTATCCAAGAGTCTACAAATAATAAATGCTGGGGAGGGTGTGGAGAAGCAGCAGCCGTCCTGCACTGTTGGTGGGAATGTAAACTGTTACAGCCACTATGGAGAACAACATGGAGGCTCCTTGAAAAGCTAAAAGTAGAGCTATCCTGCTTTTTTAGCTCCTGCAGCTTTATTTCTGGGCATATATCTAGAGAAAACCATAATTTGAAAATACACATTCACCCCAATGTTCATAGCAGTACTGTTTACAACAGCCAAGACATGGAAGCAACCTAAATGTCTATTGACAGATGAATGGATAAAGATGTGGCATATATATACAATGAAATATTAGTCATAAAAAGAATAAAAAAGGATAAAATAATGTCATTTGCAGCAACATGGATGGATCTAGAGATTACCATGCTAAGAGAAGTCAGAGAAAGATGAAGTAACATGTGATATCACTTATATGTGGAATCTAAAAAAGATACAAATGAACTTTCATACAAAACAGAAATAGACCCACAGACATAGAAAAGCAACTTATGATTAGCAGAGGGAAAAGGGAGTTGGAGGGAGGGATAAACTGAGAAATTAGGACTGACATATACATACTACTATATATAAAATTGATAACCAACAAGGATCTACTATATAGCATAGGGAACTATACATAATATTTTGTAATAAACTAAAAAAAAATAATCTGAAAAAGTATATATGTATATATGTATAATTGAATCACTTTGCTGTACATTGGATTAACAGCATTATAAATCAACTATACTTCAATAAGAAAAAGGTTTTTTAATTTGAACGGAAATTAATTCCCTGAAATAGTTGCCTGCTGTCATAACTGCTGGGAGTTTTCAGGTACTACCAGGGGAATACAGATACCACAGTTTGAAACTATTGCTATAAAATATGATTCTTAACTTTGGGGCCTCAACATCCCTTAAATTATGTTGAACTCTATAGGCCCTCTTATCCAGAAAAGTCAGTCAATCTGAGTCTTGCTTCATCTCTCTCGCTAACTCGCACACACATACCTACATACTCAGTGTACAGAAATGGTTTCATTTGCGGATCCCCTAATGCTTAAATATGGACCTCAAGTTTAAAATCATGGCTTAGAAACACTCATTTTCAGGGAACTGAAAAAAACGTTTCTTTTGGCTTTATCTTGATGCTTTTTAATTTTAATGATTTAAATGTGTTTTTTTTTTTAACAACTTTGTGTAGAAAACAAAGAGCATTGCATTTGCATGTTTCCCCAATATCCTAGGGAGAGTACCCTACCTATAACAACTGAGGATGGATTCTACATAGTTCAGATTCAATCAAACTTGAATTATGGTTCTTGGGTCATCTATTTGATCCTGTTTTTTCCCTTTATTCTGTAAGTCTCCACAAGTCTTCCTTGAATGTATAACTTCTTTAAATTTCTACTACCCATCCTCCCACCCAGTAATTTGACCCTACAAAATATTAGGGAAAGATCAAGGATCATTCATGTTATAAAGAGATTTTTCACTCCAAGAAAGGTTCACATGTGTCTTTTAAATTTTTAGCTTGTTTTTAGTGAATTTAAAGAATTATTGGCTTTACAAAACTCAAATGCATTCTATTTCCCAAGTATAAAAAAAATTTTTTTTCTTTGTAGCTTCCCTTCTACTTTCATAGCCCTTATTTTTCAATGTCTTTTCACGTGATTTTTAAAAAACTTAACCTCAGAACAATCAGTCTGGAAACAGCACACCAAAAATCAAAATCCCCACTTGGTGGGTGAAAAAGCTTAGGTGCAGCTATGAACCAAGTTCATTCTTGGGGAGGAGAAAGCTAACCCTCAGTATTCCAGGCAAATATCCACAATGCCTGCCCTGATGGCCTCTTCTGACCTTATTTGCTGATGCTATCTGTTTCTTGTGCTGTTGTAG
Seq C2 exon
ATATTGATGAGTGTCTGGAACAGAATGTGCGCTGTGGGCCGAATCGCATGTGCTTCAACATGAGAGGAAGCTACCGTTGCATTGAGACACCCTGTCCACCTGACTACCAACGGGATCCTGTGTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015235:ENSBTAT00000061144:106
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126622=cEGF=PU(83.3=48.8)
A:
NA
C2:
PF126622=cEGF=PD(12.5=7.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development