RnoINT0008454 @ rn6
Intron Retention
Gene
ENSRNOG00000062252 | AABR07072853.4
Description
NA
Coordinates
chr3:10384888-10386491:-
Coord C1 exon
chr3:10386365-10386491
Coord A exon
chr3:10385581-10386364
Coord C2 exon
chr3:10384888-10385580
Length
784 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
CTTGTTTGTGTCACCCACAGGAC
3' ss Score
11
Exon sequences
Seq C1 exon
ACATCAACGAGTGTGAGGAAGATGGCATCGAGTGTGGGCCTGGCCAGATGTGCTTCAACACCCGAGGCAGCTTCCAGTGTGTAGACACGCCCTGTCCTGCCACCTACCGGCAGGGCTCCAGCCCTGG
Seq A exon
GTAAGGAGGGGCCCAGCGGGCAGGCACATGAGTACAGGGCTTTTTCTCCAGCTTGCTCGTGCCTGGACCCCCGACTCCAGGAAGGCCTCTCGAGGCCAGAGGGAGCTGCCCTGCCAGACGTCCCGGGCCAGAGCTACGTGCTGGCACAGCTGGCAACCTGCACCCAGGCAGGGACAAACTTGGCTCCGTACACGATGATCCACCACTACATGGTGTGTGCTCTCTGGGACTGATAATGCACTGCTCCCCTCGTACAAAAAAACACCTCAGACAGAAAGCACCCCAAACATAGGAACTAGGAAATCTCACAAACTCCAGGACTCTGCTCACTGTGTTCATACGGAGGCACCAAGACCTCAGAACCTCGGGAAGGTTTCTGGAGCGTGTAACTGTTCAGGACCCTACAACCGGGAATCAGGACCCTACAACCGGGAATGAGGCAGGCGGTGGAGGAGACTCCCATAAGGCTGAACACGTTGTCTTTGAATCCCTGCTACGTCTGCGAGTCCAGACCTGTGACTCAGCCCCTAGGCTCCTAAGCGACTGAGTTTTATTATTCTGTGTTTTTACTGAGCTGCCCTGGCTTTGGGCAAGGAAAGGGAAAGGGGGAGGGCAGACATGCTAAAGGAGAGGAAAAATCCCTATCTGGCTTCTCTGCGCCTCCATTTCCTCATCTCTGAAATGGGCTAACAGTAGCATATTCAGGCAAGGTATTCGGGGAGCATGGGGATGAACTGAGGTGCACTGGATGGCAGCCCAATAAGCTTGTTTGTGTCACCCACAG
Seq C2 exon
GACCTGTTTCCGCCGCTGCTCTCAGGACTGCAGCGCCAGCGGTCCGTCCACACTGCAGTACCGCCTGCTGCCGCTGCCCCTCGGCGTGCGCGCCCACCATGACGTGGCCCGCCTGGCCGCCTTCTCCGAGGCTGGCATCCCTGCCAACCGTACGGAGCTCACCGTGCTGGAGCCCGACCCACGTAGTCCCTTTGCTCTCCGCCAGCTGCGCGCTGGACAAGGAGCGGTCTACACCCGCAGAGCGCTCACCCGCGCCGGGCTCTACCGCCTGACGGTGCGCGCAGCGGCACCCCGCCACCAGAGCCTCTACGTCCTGCTAATTGCAGTGTCGCCCTACCCGTACTGAAGCTGGCGAGGCCAGAGCTGCAGATCCACCGTGACCTCGCAGAGAGGACAGGGTGGCCCTTGCCCGTGACACCTACAGTGACAGAGAACATCCTCTTCTCCCGCCCCCGTGCGTCAGCGAGATCTTCGGTAAACACTGCTGTGCGCAGGGCCTTGACCCCAGGGCAAGGACCGCTGCCCCTTTGGTGGCAAAGCCGATGGGGCAGGCCTGAGTCCTGTCCTTCCTCAAGTCTCAGGGGGAAGCTGGGCAAGGTCTCAGGGGACCAGGACTCCAAGGAGTTCAGACCCCAAGTAGAGGGGGCAGCGGCTGGCACTGCCCTGACCACATGGAATGCAGTAATATAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000062252:ENSRNOT00000093281:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGATGGCATCGAGTGTGGG
R:
TGTAGACCGCTCCTTGTCCAG
Band lengths:
343-1127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]