RnoINT0008459 @ rn6
Intron Retention
Gene
ENSRNOG00000062252 | AABR07072853.4
Description
NA
Coordinates
chr3:10390444-10391656:-
Coord C1 exon
chr3:10391419-10391656
Coord A exon
chr3:10390507-10391418
Coord C2 exon
chr3:10390444-10390506
Length
912 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
TCTTTCCTTTTGCATTACAGAAG
3' ss Score
8.58
Exon sequences
Seq C1 exon
GACTTCCAGGAGCACTACGTGCAGACCGGGCCTGGCCAGCTATTCGTGGGCTCCACACAGCGCTTCCTCCACGACAGGCTCCCGGCCTCACTGAGCTGCAATCACAGCATCCAGTATGATGAGACCCGGGGCCCCCAGCCCCAGCTGGTGCAGCACCTTCGGGCCTCATCTATCAGCTCGGCCTTCGACCCTGAGGCAGAGGCCCTGAGCTTCCAGCTCACCACAGCCCTGCAAACTG
Seq A exon
GTGAGGCCCCACTGCCCACTTCCACCCTACCAGCTAAGACTGCCAGAGCACAGGCTAGGGAGAGGGGCTCCGCCCATTCCATATGGCTCCGCCCCATTCCATATGGCTCCGCCCACTCTGGCAGGGCCGGTTCAGCTCTTCAAGCCACTCCTGCCCAGACCTCTGAAGCTTCTTCCTAGGCAGGAGATATACTCCACACTCCGAGTCTAAACCACACCCACTCCTTCTCCCACCTGAGCACACCATGTAGCCACACCCAAGGAATTGCTTTAAAAGTATCTTTTCATTGCTTAAGATCTCTAGAGGAATGCTGTTGAAAGAGCAAAGCTCTAAGGCAAGGCGCGCCCGATTCAGAGGATTCAGTCTGTCGGCACTGCGTCCCAGCTATGGACCCAGTGGGAATCCCATGGTTCCCATCTGCACAGTGGTCATGAACTGCTAACTTCCCCAGGTCTCCAGGCCACCAGAACAGGCTCTGCCTCTACAGCCCTAACCAGGCCCAGTGGCCACCTTGCTAAGGGCAACTGTCCCTACAATTGCCGGAGCAGTCCCATCTCCCTTTCTTGCTGGCTGTTGACAGCTTTGCAACCCTCTGTGCACGGCTGTTGCATTCTCCTGTGCAGTTTTGCATGTCCTCAGTCTACTTTTCTCTAGTGGTCCCTCTTGAGTTTACCTGGCTCTCTGTCCTTACGAGCCCCCACCCCCGCCCCGGGTACATCTACAAGACCAAGCATGCCCTACAATTACCACCTCCAACAAGCCTGGGCCCAGAGCCAGCTGGCTGTCTCGCTGTCACATGTCTGGTTAAAGCTGTGCTCCCAACCAGGGCCCATAGCCTGGACCAGCCCAAAGAACAAGCCTAAGATGTTCTGGGGAACTGGTTCCCTCAGGGTCTTTCCTTTTGCATTACAG
Seq C2 exon
AAGAAAATGAACTTGGCTGTCCCGAGGGCTTTGAGCTGGATGCCCAGGGAGCGTTTTGTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000062252:ENSRNOT00000093281:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTCCAGGAGCACTACGTG
R:
CACACAAAACGCTCCCTGGG
Band lengths:
300-1212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]