RnoINT0008460 @ rn6
Intron Retention
Gene
ENSRNOG00000062252 | AABR07072853.4
Description
NA
Coordinates
chr3:10390205-10390506:-
Coord C1 exon
chr3:10390444-10390506
Coord A exon
chr3:10390328-10390443
Coord C2 exon
chr3:10390205-10390327
Length
116 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
GTCTCGTGTCTCCCACCCAGACA
3' ss Score
7.1
Exon sequences
Seq C1 exon
AAGAAAATGAACTTGGCTGTCCCGAGGGCTTTGAGCTGGATGCCCAGGGAGCGTTTTGTGTGG
Seq A exon
GTGAGTTCATCCCCACCCGGGGAAGAACAAAGCTGACCTCTCCTTCTGGGCTGTATAGCCCTCCCCAGCCAGCTGGCAGGAGCACCCGTGAACAGAGTCTCGTGTCTCCCACCCAG
Seq C2 exon
ACAAGGACGAATGCTCAGGGGGTCCCAGTCCCTGCTCCCATACCTGCCGTAATGCTCCCGGCCGTTTCTCCTGCTCCTGCCCCACTGGCTTCTCCCTGGCTTGGGACCGCAGGAACTGTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000062252:ENSRNOT00000093281:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAAATGAACTTGGCTGTCCC
R:
CTCTACAGTTCCTGCGGTCCC
Band lengths:
186-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]