RnoINT0008462 @ rn6
Intron Retention
Gene
ENSRNOG00000062252 | AABR07072853.4
Description
NA
Coordinates
chr3:10388384-10389767:-
Coord C1 exon
chr3:10389633-10389767
Coord A exon
chr3:10388513-10389632
Coord C2 exon
chr3:10388384-10388512
Length
1120 bp
Sequences
Splice sites
5' ss Seq
AAGGTGACA
5' ss Score
5.19
3' ss Seq
GAACACCACTGCCTCCCCAGATG
3' ss Score
6.01
Exon sequences
Seq C1 exon
ATGTGGACGAGTGTGCAGGAGACACCCACCTCTGCCAGGAGGGGCAGCACTGTGTGAACCTGCTCGGCTCCTATAACTGCCTCCCTTCCTGTAGGCCTGGCTTCCGGGTAACTGCTGACGGAAGCAACTGCGAAG
Seq A exon
GTGACAGGGGCACCAGGCGGGGCCCAGCCATACTCCCAAGAAACCAGAGAATGTCACTGGGATTCGGGGGCATCTAGAACTCTCTTGGCAGAAGCCCAGAGCTGGGTCCTATCTTTTCCTTTCAATCTCTGCCCACTGGGTTTGATGAGGTGAAGGAAATAAGTCAGAGACAGCAGGGAAGCCACCTCCCTCCATGACTGACCCCCACATCGTGGTCCAGACTAGAGCCAGCCTCCGGGTCCTTCTCAACACAGCTCCCAGGCAGTCACTGTGCATCACTGACCTTCTCATTGACCTTTATGCACTGTATGGTTTTATGCACCCGGCCTATGTCGTGCATTGTTTTCCCAAGCAGACTTGAACATCTGTTCATCCCAGATCAGACACTAGCAACTAACTAAAGAAGTAACACCATAGAGTCTAGGGTAGTGAACCAGGCAGTTAATGGGCGGCTTACAGAGTCAGGGCTGCTTGTGAGGACATAATGACTCAAAGACGGACACGTCATGGGGGAGCCCTCGCCAGCCTGGGCAGCAGCTAGAAGGGTCTCCTCTTCCTTGGCAAACATTCTGTCTATATAGCCCTGAGAGAGAGAGATTTGTGAGTCTTCAAGTTTCTGAAGCTTTCTAGATCTTAAGAGATTCTTTCCCCCTCCCCCCTCCCTGCCTCCCTCCTCTTTCCTTCTTCCTTTCCTATCTCCCTTCATCACTCTCTCTCTTCCTTTCTCCATCCCTTCCTTCCTTCCTTCCTCTTTCCTATATACCAAGTCCTTACACCCTGCACACATCTGACCCCCTCACCAACACGGCACCAAAAGGGCCTCTTCTCACACACGAGGAGCTTGTGTAAAAGGATTGTTGCCTACCTAGGGCCTAGAATATGTCAGCTCTGCTAGAACCCGCATTCTAAGCCCCTTCTTTTCGGACCCTGTTGCCTTCTAACCTTGTGTGGTACTCAGAGACGGAGGAGGCAAAGTTTTAGCGTGAAGCCTTGTGCAGCCGTGGTCAGAAAAAGAGACAGACAAGGCCTTACAGTGGGGGGGGGAGGGGCCATCCTTGGAGGAGGCCTCCGGGCAGAACCACTTCCATGAGCACGCCTGTGAACACCACTGCCTCCCCAG
Seq C2 exon
ATGTGGACGAATGCCTGGAACAGCTGGATGAGTGCCACTACAATCAAGTCTGTGAGAACACTCCAGGTGGCTACCACTGTGGTTGTCCCAGAAGGTACCGCCAACAAGGTCACGGCCTGCCTTGCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000062252:ENSRNOT00000093281:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGAGTGTGCAGGAGACAC
R:
CAAGGCAGGCCGTGACCTT
Band lengths:
254-1374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]