RnoINT0010055 @ rn6
Intron Retention
Gene
ENSRNOG00000043296 | Abca14
Description
ATP-binding cassette, subfamily A (ABC1), member 14 [Source:RGD Symbol;Acc:1561491]
Coordinates
chr1:189969336-189969978:+
Coord C1 exon
chr1:189969336-189969395
Coord A exon
chr1:189969396-189969728
Coord C2 exon
chr1:189969729-189969978
Length
333 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TCCCCTGTGTTTTGTTGTAGAGC
3' ss Score
10.54
Exon sequences
Seq C1 exon
ATGGATTCACTGCTGATGAGGCAATTTTTAGTCCTCCTGTGGAAAAACTTCCTCTTAAAG
Seq A exon
GTAAGTGACGATGTCTGTGGGAGCAAGATGGGAAGTCTGTGCAGCCAGAGGAGGAGCTAACAGCTTGTTAACTACATTTGGTTATAGTTGATTTTGTTCCACGGCTGGGCTAGCATTGCTTAGTCTGAAGAACAGCCTGAGAATCAATAGAATTCATATGAGAGTGAAATATAAGCAACGCAAGGAAGATAGTCAGGGGAGGGGCATTCTCATTGTAGGGCAAAGCAGAATACATAGGGCTGTGTTGTTAATTAACCCATGGCTACACATAGAAGCATACACATGCATGTGCTCATGCATTCACTAGCATGGTTCCCCTGTGTTTTGTTGTAG
Seq C2 exon
AGCCGGAAGGTGTTTGGCTTAGTGGTGGAGATCATCTTGATATTTCTGTTGTTTGTATGGACTTTGACCGTACGCAGAATTTCAAAGAAGAAATTTATTCCTGCCATGATTTTCAATCCTATTCCCTTGACATTACCTGGGTTCCTTAATCAGAACTTTGACTATGAATTGGCTTACGTGCCTTCTGATAGTAATGCAGCAAGAAATATTACTGAGATGGTGAAAAAGGATTTAAACTTCAACTTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043296:ENSRNOT00000055063:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF126982=ABC2_membrane_3=PU(18.3=95.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATTCACTGCTGATGAGGC
R:
GTTGAAGTTTAAATCCTTTTTCACCA
Band lengths:
302-635
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]