RnoINT0010103 @ rn6
Intron Retention
Gene
ENSRNOG00000027505 | Abca15
Description
ATP-binding cassette, subfamily A (ABC1), member 15 [Source:RGD Symbol;Acc:1305981]
Coordinates
chr1:190165040-190165591:+
Coord C1 exon
chr1:190165040-190165165
Coord A exon
chr1:190165166-190165396
Coord C2 exon
chr1:190165397-190165591
Length
231 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TTTTGTTTTGTTTTTTTAAGATA
3' ss Score
9.9
Exon sequences
Seq C1 exon
GATATAATTTCCAATGAATTATCTGGGACTTCTGAAGATAATGATGTAGAAAACGAGAGAAGAGAGATCCTGTACCAGCCTGAAAAGTTCCTGAATTGCCCAGTTCTCATTAAGCAGCTCACAAAG
Seq A exon
GTAAGGCCATTTCATGGCTTTCATAGTCTGCCCTCCACCTCCTCTGAGGGTGTCAAAGTCTCACTGTGGTTCTTCAGGAGCTTTGAAAACACATCTCTAAACTTCTTGTGACACTATCTGAGGGAGTGACCACTTTGTCCACAATATTTCTTGTATGTAACCTACAAATGTCCTTTACTAAATTGTGCTTTGTGTATGTGTGGTTTCTTTGTTTTGTTTTGTTTTTTTAAG
Seq C2 exon
ATATACTTTAAGTCTCCACTAATTCTGGCTGTGAAAAATATCTCCCTTGCTATCCAAGAGAGGGAGTGCTTTGGATTACTTGGATTCAATGGAGCAGGTAAAACAACTACCTTTCAAATTTTGACTGGAGAAATTACTCCTACCGCCGGGGATGTGTTCATTGATGGCATTAGCATCACAAAGGATGTCCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027505:ENSRNOT00000037026:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0000522=ABC_tran=PU(37.2=83.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAATGAATTATCTGGGACTTCTGA
R:
TCCTTTGTGATGCTAATGCCA
Band lengths:
302-533
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]