RnoINT0010217 @ rn6
Intron Retention
Gene
ENSRNOG00000014268 | Abca2
Description
ATP binding cassette subfamily A member 2 [Source:RGD Symbol;Acc:620238]
Coordinates
chr3:2653901-2654306:+
Coord C1 exon
chr3:2653901-2654028
Coord A exon
chr3:2654029-2654195
Coord C2 exon
chr3:2654196-2654306
Length
167 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CCAGACCCCTCACAATGCAGGTC
3' ss Score
5.19
Exon sequences
Seq C1 exon
TTTCATCCTTCTCTCTGGACTCGGTGGCCAGGGACAAAAGAGAGCTTTGGCGTTTCCTGATGCAGAACCTGTCACTGCCCAACAGCACGGCCCAGGCCCTCCTGGCTGCCCGTGTAGACCCTTCTGAG
Seq A exon
GTGAGGCGTGTAGACCCTTCTGAGGTGAGGCGGGCAAGTATCCCTGGTAGCCACGCCCCTCTGCTTCCCCCATCACCCCTGGTTACAGTGGGGAGGGCACTCCAAGTGTACCTGAGCTCCTCTCAGGGCTCTGGAGCTGCTGCTGAGCCAGACCCCTCACAATGCAG
Seq C2 exon
GTCTATCGCTTGCTTTTTGGTCCTTTACCTGACCTGGATGGAAAGTTGGGGTTCCTCAGGAAGCAGGAGCCCTGGAGTCACCTGGGTAGCAATCCTCTGTTCCAAATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014268:ENSRNOT00000020339:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTCTCTCTGGACTCGGTG
R:
CTCCATTTGGAACAGAGGATTGCT
Band lengths:
234-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]