GgaINT0125058 @ galGal4
Intron Retention
Gene
ENSGALG00000001226 | ABCA2
Description
ATP-binding cassette, sub-family A (ABC1), member 2 [Source:HGNC Symbol;Acc:HGNC:32]
Coordinates
chr17:442567-443002:-
Coord C1 exon
chr17:442875-443002
Coord A exon
chr17:442669-442874
Coord C2 exon
chr17:442567-442668
Length
206 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
TGTTCCTGTCGTTGGTACAGGTG
3' ss Score
8.55
Exon sequences
Seq C1 exon
GATCTGGTTTCACACTGGGGTGGGCAGCTAAGGACCGGGGGGAACTGCACCACTTCCTCACACAGAACCTATCCCTTCCCAATGGCACAGCTGAGCTGCTCCTGGGCTCCAGCGTTGACCTGCGGGAG
Seq A exon
GTGGGTGACTCTGTGGGGTTTGCTGAGCTCAGTGCTGCAGCAGCTGGTGGGCGTATCCTGGCCCAGACTGAACCCTGGATGCCAGACCTGAGGGAGTCCCACTGTTCTGCCCTGTAGTCCCATACACCCAATGCTGGGGCACTGCTGGCAGTGGGGTCCCTCTGCTGTCAGCACACTCAGCAGTCCTGTTCCTGTCGTTGGTACAG
Seq C2 exon
GTGTACCGCCTGCTATTTGGGGCCTCTCCTTTGGCACCTGATGACACCCATGAGCGAGACCTGTGGGATCGGTTTGGACGCGGTGAGATGGCACAGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001226:ENSGALT00000040507:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.147
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTGGTTTCACACTGGGGT
R:
CTCCAGCTGTGCCATCTCAC
Band lengths:
230-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]