GgaINT0125058 @ galGal3
Intron Retention
Gene
ENSGALG00000001226 | E1C8X7_CHICK
Description
NA
Coordinates
chr17:824658-825180:-
Coord C1 exon
chr17:824966-825180
Coord A exon
chr17:824760-824965
Coord C2 exon
chr17:824658-824759
Length
206 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
TGTTCCTGTCGTTGGTACAGGTG
3' ss Score
8.55
Exon sequences
Seq C1 exon
CTGGCTCTGAGATGTCCCTTTGTGGGGCTGGGCCACGTCCTGGCCACTCATGGGCTGCTCTCACCCCCCCGCTTTGCTCCTTGACAGGATCTGGTTTCACACTGGGGTGGGCAGCTAAGGACCGGGGGGAACTGCACCACTTCCTCACACAGAACCTATCCCTTCCCAATGGCACAGCTGAGCTGCTCCTGGGCTCCAGCGTTGACCTGCGGGAG
Seq A exon
GTGGGTGACTCTGTGGGGTTTGCTGAGCTCAGTGCTGCAGCAGCTGGTGGGCGTATCCTGGCCCAGACTGAACCCTGGATGCCAGACCTGAGGGAGTCCCACTGTTCTGCCCTGTAGTCCCATACACCCAATGCTGGGGCACTGCTGGCAGTGGGGTCCCTCTGCTGTCAGCACACTCAGCAGTCCTGTTCCTGTCGTTGGTACAG
Seq C2 exon
GTGTACCGCCTGCTATTTGGGGCCTCTCCTTTGGCACCTGATGACACCCATGAGCGAGACCTGTGGGATCGGTTTGGACGCGGTGAGATGGCACAGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001226:ENSGALT00000040504:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.124
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTGAGATGTCCCTTTGTGG
R:
CGTCCAAACCGATCCCACAG
Band lengths:
292-498
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]