BtaINT0011208 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020766 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr7:45166348-45166679:+
Coord C1 exon
chr7:45166348-45166466
Coord A exon
chr7:45166467-45166602
Coord C2 exon
chr7:45166603-45166679
Length
136 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
3' ss Seq
TCTGTGCTTTACTCCCTCAGCCT
3' ss Score
6.88
Exon sequences
Seq C1 exon
GGTTTCGCGGCTCCTGGCAGATGCTCGCACTGTTTTGGGGGGCCCCAGTGCCCATAGGATGCTAGCTAGCCTGAGAAAGCTGATGCCCATTCTGAAGGCTGCACACACAGCCCGAGCAA
Seq A exon
GTAAGAAGGCGGGCCTGTGGTAGGCGGGGCTGGGCTCTGCGCCTCCACCTGATGGCACAGCTTGGAGTGGGACAAGTGGGACATGGCTCCAGCTAAACTTGGCCTCACCCTGGTCTTCTGTGCTTTACTCCCTCAG
Seq C2 exon
CCTTTCCTTGGCCCAGTGAGCAGCCCAAGGAGGGATTGTCCCTGGCCACTCAGCTGCTGGGGACACTGCTGCAAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020766:ENSBTAT00000020083:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.269
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCCTGGCAGATGCTC
R:
CTTGCAGCAGTGTCCCCAG
Band lengths:
186-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]