MmuINT0008023 @ mm10
Intron Retention
Gene
ENSMUSG00000035722 | Abca7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:MGI Symbol;Acc:MGI:1351646]
Coordinates
chr10:79998244-79998524:+
Coord C1 exon
chr10:79998244-79998356
Coord A exon
chr10:79998357-79998450
Coord C2 exon
chr10:79998451-79998524
Length
94 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGAG
5' ss Score
4.86
3' ss Seq
TTGGCATCCCCTCCCCTCAGCAC
3' ss Score
6.61
Exon sequences
Seq C1 exon
GATCTCGAGGCTCCTCGCTGATACCCGCACAGTGCTCGGGGGCCACAGCATCCAGGACATGCTGGATGCCCTGGGGAAACTGATCCCCGTGCTCAGGGCAGTTGGAGGTGGAG
Seq A exon
GTAGAGACCTGGGGCTGTAAATCGGGCAGGGGGTTGGGGAGGAGGCTGAGCTGCAGGCTGAGCTTGGCTGCCTGTTGGCATCCCCTCCCCTCAG
Seq C2 exon
CACGACCACAGGAGAGTGACCAGCCGACCAGTCAAGGGTCAGTGACTAAGCTTCTGGAGAAGATCCTGCAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035722:ENSMUST00000132517:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=NA C2=0.600
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCTCCTCGCTGATACCC
R:
TCTCCAGAAGCTTAGTCACTGAC
Band lengths:
167-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types