GgaINT1005132 @ galGal4
Intron Retention
Gene
ENSGALG00000002453 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr28:2833104-2833823:-
Coord C1 exon
chr28:2833562-2833823
Coord A exon
chr28:2833489-2833561
Coord C2 exon
chr28:2833104-2833488
Length
73 bp
Sequences
Splice sites
5' ss Seq
CTGGACCTC
5' ss Score
-14.86
3' ss Seq
CCTCTCCATGACCCCCACAGGAG
3' ss Score
6.78
Exon sequences
Seq C1 exon
CCTGTCCCGCCTGCTGGCCGATGTCCGCCAGGCCCTGCACCGTGCTGATGGATGGCAGCTCCTGCACCACCTCGCCCACCTCCTGCCTGCACTGCGGGGCCGCACCGCGTCGATCTCATCCCGGCTGCTGCGGGACGATACCTTCACACGCCTCCTCCGCACCAACGCCTCGCTGCTGCCCGTGCTGCACCAGGCACTGCTGGAGGGGCTCAGCCCGCGTGATGTGAGTGTCCATGGTGCAGCCGACCTCCCACCACAGCTG
Seq A exon
GACCTCCTCCCCCCCCCCCCCAACTGCTGGGGGTGTTTGGGGTGGCTGTGAGCCCTCTCCATGACCCCCACAG
Seq C2 exon
GAGTGGATGAGCTCAGAGATAGATGATGCCGTGGCAGCCCTGGGTCCCTTCCTGCAGAGCGCTGAGTCCCTGCTGCAGGAGGTACCGCATCCCCACATCATCCCCACATCCCTGCCCCATCCTGGGCCCTCCCCGCAGCCCCTCTCTCTGCAGCTCTCCTCCATGGGCACCGTGGCTGAGCTGCAGCGTGAGGTTGCGCTGCTGACGGCTCCCGGTTCCTCTGCTGTGGGCGCCTTTGAGGCCGTATCGCGCATCGCCTGTGGGCACCCCGAGGGTGGGGGGCTGCAGGTGCCCTCCCTCAACTGGTATGAGGACAGCGACGTCAGTGCCTTCATGCACCGCAATGGCTCCAGGCACAGCACGGAAACCCCCGACAACGACAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002453:ENSGALT00000003869:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=NA C2=0.357
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACCTTCACACGCCTCCTCC
R:
TCTGCAGGAAGGGACCCAG
Band lengths:
183-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]