RnoINT0010282 @ rn6
Intron Retention
Gene
ENSRNOG00000004378 | Abca5
Description
ATP binding cassette subfamily A member 5 [Source:RGD Symbol;Acc:628661]
Coordinates
chr10:98608053-98609695:-
Coord C1 exon
chr10:98609556-98609695
Coord A exon
chr10:98608173-98609555
Coord C2 exon
chr10:98608053-98608172
Length
1383 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
CTATTTCTCCTTTCTTTCAGGCT
3' ss Score
10.88
Exon sequences
Seq C1 exon
CATGTATATAGACAGGTACTGTGCCACAGAGTCGCTCTCGTCGCTGGTTAGACAGCACATCCCTGCGGCCGCTCTGCTGCAGCAGAATGACCAGCAGATTGTCTATAGCTTGCCCTTCAAAGACATGGACAAATTTTCAG
Seq A exon
GTATTTTATTCTCACTTTCTTGGTTGAATAGAGCTTTTGTTTTGGGAATAGGTTTTTCTCTGCCTGTTTTGATTATTTCTCTATGTAATAGTCTCAGCTGGCCAGAGTTTGCAGTTTTTCTGCTTAAGCTTGTCTTCGTACCTGGAATACTGTACACTAATATGTATGATTTTTGTTTCTGTCTTTTTACAAAGAGTACACAACTTTCATTTGTTATTTTAAATACTTAAGGGAAATAAAGAGAAATATGTGTATGTTGTTAAGAAAACAAGAAAATTGGGGTGGGTTTGGTGGTGCCTGTCTATACCATAGCAGCTCGGGGACAGAGACAGCCAGAAGATGGTTATGGATGTGAGGCCAGTCCAGTCTGCATAGCAAGTTCCAGGCCCACACAGCCACTTCACAATGGGAGCCCTGTTCCGAAGCCGGCAGAGTTGCTCGTAGTTTTCCTAAGGGCGAGGTGGTGTGTGTGTGGTTTTCCTGAGGGCGGGGTGGTGTGTACGTGGTTTTGCTCTTTCTTTTTGTCGTTGCTTACTGTATATGTGTGTAGGGAGGCTGTTCATGTGCTTTCAAATAATTTCTAATTTCAGAATAAGTTACATAGTAATTATTTTAATTTAGGATTATTTTGTTTAAGTGCTATAAAATATTAATTTGAGTTTAAAATACATTAAAGTTCTAATTAATATTTTTCCATAAATATAATTTCCATGGCATTCTGTGCAATTTATAATGTTAAAAGTATTCTGACAGCAAAATCTTTGAGTACCGCTATGCTGGCTAAGTAAATTTAGTCCTTCCTTCCTTCCTTCCTTCTTTCCTTCCTTCTTGTGTTGTGTATTTTTTGTTTGTTTGTTGTTTTGTTTTGTTTTGGAGATAGGATCTTAGACTACAGTGCAAGCTGTCTGGCTGTCTTGGAACTCACCATGTGGTGTGGGTTTGGCTTAATTTCCTAGCAGTTCTCTTGCCTCAGCCTCTGGAGTGCTATGAGCACAGACGTGAAGAGCCTGCCTCAGACTCATTCTCTGATGGCATTTCAGACTTTGTATTAGTTGAATGGCATTGTAGGTCAGTTTATGTTGATTTCGTTTTAAATCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGGGTGTTTGCACATGAGTACGGGTACTTGGGGAGGTTTCTCAGAGCATCAGATTCCTAGGAGCTGGAGTTAAGGCAGTTGTGAGGCACCCCTCCCTGGGGATGGGGAAGGACATATAAGGTGCTCTTAATGACTGTACCATCTCTCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCCATGTAGAGAGTCCTGTATCACTTGACCTATTTCTCCTTTCTTTCAG
Seq C2 exon
GCTTGTTTTCTGCTCTAGACATTCATTCAAACCTGGGTGTAATTTCTTATGGTGTTTCCATGACGACATTGGAAGACGTGTTTTTAAAGCTAGAAGTTGAAGCAGAAATTGACCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004378:ENSRNOT00000005848:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCCACAGAGTCGCTCTC
R:
TGCTTGGTCAATTTCTGCTTCA
Band lengths:
240-1623
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]