GgaINT0129718 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:7953050-7953412:-
Coord C1 exon
chr18:7953271-7953412
Coord A exon
chr18:7953170-7953270
Coord C2 exon
chr18:7953050-7953169
Length
101 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
TGGTTCACTCTGTCACACAGATC
3' ss Score
6.4
Exon sequences
Seq C1 exon
AGGATATGCATAAATGATCAGTGTGACCCTGGGCTTGCATCATCCCTGGTCAGGCGGTACATCCCCAATGCTGTGATCAAAGGGCAGGATGGGGATGAGCTGTGTTACGTGCTGCCTCTGGAAAACACCAAGAGCTTCCCAG
Seq A exon
GTAACAAAAGCCTGCTGTTGCGTTGAGGTTGTAAGGGGAAGCCAAATCAGAATGCTAAGGGAGCCAGGTGTTGGGCTGAGCTGGTTCACTCTGTCACACAG
Seq C2 exon
ATCTGCTTGGCCACCTTGACAGCGGCCTCGTGCTGGGGGTTGTTCACTACGAGGTCAGCAGGACAACCCTGGCAGATGCTCTCCTACAGCTGGAAGGCAGGGAAGCTATTGATCATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021393:ENSGALT00000006911:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGATCAGTGTGACCCTGGG
R:
TCAATAGCTTCCCTGCCTTCC
Band lengths:
242-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]