RnoINT0010320 @ rn6
Intron Retention
Gene
ENSRNOG00000046890 | Abca6
Description
ATP binding cassette subfamily A member 6 [Source:RGD Symbol;Acc:1308998]
Coordinates
chr10:98514916-98517761:-
Coord C1 exon
chr10:98517622-98517761
Coord A exon
chr10:98515033-98517621
Coord C2 exon
chr10:98514916-98515032
Length
2589 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
ATTCTTTCTGTTGGTTTAAGAGT
3' ss Score
5.7
Exon sequences
Seq C1 exon
TTTGTTCATGAATGAAACGTGCGATTCAGAGCAGTTAACATCCTTCATCAATCACCACATCCCCGGTGCTAAACTAAAAGCAAAAACCAAAGAAAAGCTTGTGTACACTTTGCCACTGGAAAAGACAAGCAAGTTCCCAG
Seq A exon
GTAATATAAATGACTAGGATGGAATAAACACTTTGAATTTTGTCATAATTTTTGTTCTTCAACGGACCTACGTTTCGTCTTAGTCTTTATCATTCAACAAAAGTTAGGGTGAAGATTTGAGTGCACTGAAGCTATTTGGTCATTGATCAGTGGAAGCACTAGCAGGGAGGAGCCATGACAGAGGGCAGAGGGAAACCTGGGAAAGCTTGCATTCTGGAGCAGGGTTCCAGGGTGGGCAATAGGAGTGTAGCACCATTGGCGGAAAATGAGAGTCAATGTCTCCGCGGCTTCACTAGAGGAGAGGCGTGGAGACACTGCTTCCTCATTTCCCCCATCTATCATGAGTTAAGGGACTTACTCAGGAATAGTAACTCTTCATCCTTTTGGCTTGCTCTGAAAATTAACTTATCTGCATCTAAGGTCAAAAAAAAAAAAAAAAACCACCCTCATCAGGTAGATGTTTAGTAAGCAGATTCACTGACTCTGGTGATGACAGTAGAGACGGGGACATGTATGACAGGAAGGCCTATGGCAAAAGTATTTTTGTATTTTCATTTTATTGTACATGCATTTATGTTTCAAAAGAAAACATAGTTTATTTATTTAGCATGGGCTTCCAGCCTGCTGGGTAGCAGTCACAAGCTATGTGGTTTTTCTTTGTTTGTTTGCTTTTTTTTTTTTTTTGCTTATTTTTTGGCTAAGTAACCCTAAAAAGCATAAACTGTGTGTATAAAGTAAACTATGTCAAGTACTGTCTTCATACCTCCCTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGATACTAGGGATTAAATTAAACACAGGGCTTCATGCATGCTAGCTAGTGCTGGTGTTTATATAGAATAGGGTCAAAGGACACAGAATCAGATGCAGTCCAAAGAGAAGGCTAAGAGTTTGTCTGATGGAGATTAAGAGAGTGAGCAGAGTGCGGGTAGGAATGGATAAAGTTGTAGGGTACATGAATAGCTCATGGAGTTGAAGGGTTTTGAATATTTGATGATTGACATTGATTTTTATTCTAAGCACATTGGGTCATCTCTCTCAGTGGCTTCTCAATGTGCTTAGTGGTTTAGTAGGAGGGACATCACATATGACCTTACTTCCATTCTTGGCATTAAGATCACTCCAGATAAGGTCAACCAGGGTAGCCCACAAGAGACTAGCTATGGAGCTAACTTAGTGGCTCAGAGGGGCTTCTGGTCTACCACGGCACTGGTAAAGGTGGAATTGAGTAGGTGTCTTCAAAATATACTTCGTGATAAAGCTGCAAGGTCTGTCTTAAGGGATGTACACAGTATGACTTTTAGAATTTGGCTTCAATCAGTGAGTAGAATGGTATTTATCATAAATTAGTGAAGAGAAGAGTTGCATCCTAGTGAGAAGAAAGTGTCAGTGCCCTGTCTCAGAATTTAATCTGGGTTGACCTCTATTCACAGGACATTGGAGGTAAAGGGAGAAAGTCAGGCATGAATCTGAGGGACATGGGTATGGGTTAGGAGCTGGATTTGTGGGTGGAGCTCTAAACAAGAAAGTTGTTTAGAGCTGAAACTCTGAGAGAAAGCAAAGGAGAAGTCACGAAGGATGTAGGAACTGAAAGTTCTATCTGTAGTTAGATGGAGACGAGACGCGACTGGTAAACTTTTCCTCTGAACTGTATTCACAGCCCAAGTAAATTGTGTTGTTAAGGACCAAAAGGAAAGCAGGAAGTTAAAGAAAGGGAGAGGAAGTAATAAGAAAAAAAATTTAATGAAGTTAGAAGGGGCATGTGACAGAGCCACACAGGGAACCAGGGAGGTTCGAGGAGACAATGGGGCTGAATACGCAAATACACTGTATGCACATATAACAATTTTCAAAGAATTAATGCAAATATTATATTTACAAATAATGAAAGACTTATTCATTGAAATTAAAATACAAAGGTCTTGGTGACCTAGAAGAGAGAAGCTTCTGTGGAGGGAAATGGACAGCATATGCACTTGAGCTGTCTATAAGATGTAACCCACTAACGTGGACAAGTTTTCGGAGACAGACACATATATGAAGAGAGATGGGAGGAAGCTATTTTTGGCCTTCGCTTTGTGGACACCGTAGCATTCTGTCTGACCCAGAAGGTATAGAAGACAATTATGATGGAAGAGAGAGGAGGTCACTTTGGGAAGTCCTCGGAGGATAAAGTTGAGAGCTTAAGTAAAAATGGGTGGCTTAGGAAGGGGCAGCTGCAAGTGTTACACTTACATGAAGAAGCCCAGTTGTGGGCACAGGCTTATATGGGTTGTGGCATGGCTGTGGTCTTTATGACTGTTCTTAGTCCTCAGGGAAGTCTGTAGGAAAATGAGAATCCAAGAATATAAGGTATAGGAAGGCACCTGGAAGATGAAACTTGGCATAATAATTTCTGAGAGAGTGATTTTTCTTTTCAATTATGATGGTATTGCAAAGACACGATATTTCTGAACACCATATTTAATACCAATGTTACTTTATTAGAGTTAGTTTATTTGTATCATTTTGAAAGTTTATGCATTCTTTCTGTTGGTTTAAG
Seq C2 exon
AGTTCTTCAGTGATCTCGATAAATATTCTGGCCAGGGCTTGATGAATTATGAAGTCTCCATGTCAACTCTGAATGAAGTCTTCATGAACCTGGAAGGAGAACCAAGTACCACACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046890:ENSRNOT00000073149:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.050
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]