RnoINT0010326 @ rn6
Intron Retention
Gene
ENSRNOG00000046890 | Abca6
Description
ATP binding cassette subfamily A member 6 [Source:RGD Symbol;Acc:1308998]
Coordinates
chr10:98502792-98509206:-
Coord C1 exon
chr10:98509069-98509206
Coord A exon
chr10:98502900-98509068
Coord C2 exon
chr10:98502792-98502899
Length
6169 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
AACTCCTTTTGTATTTGCAGGGC
3' ss Score
8.53
Exon sequences
Seq C1 exon
GACTACAGATTTTCAGCTGTGTGTAACACCAAGAGGCTACACTGCTTTCCCATATTGATGAATGTTATCAGCAATGGAATCCTTCGCATGCTCAATCATACACAGCACATCAGGCTTGAGGAAGATGTACTCTCATCA
Seq A exon
GTGAGTACTACATTCGTTTGATCCCGAACAATCAAAAAGATGACACTCATATTTGATCGTTGACCCTAAGGATAGTTAATGCGTCCTCAGAGTTGTACGCTGTCTGACTCATGCCACCAACCCCTCGGCTTGTCTGAGTTGCAAGAGAGATAGACACAGGCTGCACTTTCACAATCCAGGCTTTAGGAAGTTTCTAGAAGGGAGGCATTGGCAAGAGACAGAACAAGAGAGACCATCATGCCTTAGAGTCATTCTACTTCCTTTTTTGTTAGCCTAGTCCAGAAATGACAGTGATTTCCCATTTCTGTGTTTTGACAAAATTCCAATTTATTTTTGACAATTTCGTATACGTACAGAATGCACTGTGGGTGTATTCCCTTTAACTATCCCCTCTTACTCCTTTTGCACCTCTGTTGACTCCCTTGTTCTTCCCCAGTGGACTCAACACCCATCCTAGTGTGTAGTTGCTTTGCAGGAAGCTGTGGCTTCCCTCTGCTTGTGATTGCAGTGGCCTGGGGTAGCCTGGAGACAGGATTTCATTTGCTCCTCTGCCTCCTGTGACCATAGCAGTCTTCCCACCCCATCTTCCATGATTGCTCCCTTGACTTCCAAATGGATGATATAGATGTCTTCTTCAGGTTCGAGTGTTCAAAAACCACTTGTTCTCAGTCAGCAGTGTGACCAGTTGTGAGTCTCTGCAGCAGCCGTCACCTCCTGCTACACAAAAAAGAAACAAGATCAGCATTCGTCTATGGGTATAAACATAATGTTCAGGAGGCATTATGGCTCCATGTCTGTTTATCAATACACCGGTGGTACACTCCATCCCCTGGAGGTACTGTGACCTCCCCAGTTACAGGTTTTTGACCAGATTTACAGTAACAGTCACCCATTACCTTCCATGGAGAAGATCTCAAATCTAGTTGCAAAGCCATTATCTCTTCCCTTAATGATCTTGCCGTCATTGCAGGAATGGTTGGTTCTATCTTGCCGGGCAGGTAAATATTGTAGCAAGCAGGACCCACTGATGACTTTTCTTCCCCAGCAGCCTATGTAACTTTTCCTGTCAATCTAGAGTCCTTTGGATAATTTTATAAGAGTCATGTATCTGGGTCATGCAGTAGCTTCCCTTTTAGCTTTTCTGAGTAATCTCTGCATTGATATCTACAGCAGCGTCAGCAGTTTACGCTCCCACCAACAGTGAATAAATTTTTATTTATTCCCCTTCTCCCACTTCCTCTCCACCACTTCCTTGAAAGTAGCTCTTCTAACTGTGAGAACCAGTCTCGAAGTAGTCCTAATTTGTATTCTTTGTCCAGGATGGATGAACTTATAGATGCATATGCTGTACCAAAATGAGATAAAAAAAAATTTAAACATACCTATAGTAAACAATTAAATTGAAGAGGTAATAAAATCCTTATGATTAAAAAAAACACCAAAGTCCAGGTCCTGATGAAGTTAGTGAAGAATTCTACCAGATTCTTAAAGAAAAATTAAAGCCAGGGCTTAGCAGATTGCAAAGGTAGGAGAAAAGACTTCTGGTCTCACATACGAAGTCTCCTTCATGTCAGTACCCAAACCACATAGAGCAGAACAATAAAGTAAGAAAACTACACACTAATTTCTTTGATGCACACAAATACAGAAATTCTCAGTAAATCATTCATAAAGCAAACTGAGGAAAATATTTAAAGTATTTTGATTGGTCTGATTCCATTTCAGAGATGCAGGGATTGTCGGATGTCTGTATGTAAGTAAAATTGATTAGTCATAGAGATGTCCTCCAGAACAAAAGTTACATAATCATTGCAATAGTTGCATAAAATGCCTTTGACAAACTCCAATATCTTCCGTTTTGAGCTGAAGAAAGACAAGAACGATAGATGTGCTAACATGGGTGGGGTAGGTGAGAAGATCTTGAAGCCTCAACCCTGCACAAAGAAATGCAGGCAACTAAGGAGTGCTGAGAGCAGGAGAAATAGTCTTCCCCAGGGAGGAGCTCACCAGTTGATTATCCAATTAATGGTCAGCCCTGAAAACCAATACACACAAATAACGGTATATAGACTGGCCAGGTTGTATTTATGTATTGAAGCATACATGTGTGCATGTAGACATGACAATTATGAAAAGGAGGCCATGAGTTTGGAACAGAGCAAGGAAGGATGTATGAGAGAGGGAGTTTGGAGGGAGGAAAGGGAAGGGGGGAATGGCTTAATTATGTTATAATCTCAAAATATAAAAGAAATATTACAAAAAGTGCTGGAGAGATTAGGGATATAGGCACCATTGACACATAAGGAGAGCTGTTTATGACAAACCCATAGTCAACGTCATGCTAAGTGGAAAGGAACTTGAAACGTTTTCATTAAAATCAGGAACAAGGCAAGGGTGTGCCTCCTTTCTCTGTTCTTACTCAGTAGAACGCTTCAAGTTGTAGCTAGAACACTAAAGCCATAGAAATAAATAGGAGATTCAAACAGGGAAGGGAGAAATCGGCTTTCTTATTTAGAGATGATTTGATTTTGTATCTAAGAGGCCCTAAAGACTTCAACACCTGGCCAGTGGCATGACCTCGTGGGAAGGCAAATGATCTCCCAATAAAAACCCTACGGCATGAGTTTGATTCCCAGAATTTACATGCAGGTGGAAGGAGAGAACTGATTCCACAATGTTGTCCTCTGCAGATGTGACTTACACCCACTCACACAGACAGCACACCCAAATGGTGATGATGATGATGATGATGATGATGATGATGATGATGGTGGTGGTGGTGGTGGTGGTGATGATGATGAGGATGATGATGATGAGGATGATGATGATGGTGATGATGATGAAAGAAAATAAAAAGAAGACTGTGCTATGAACTCATAGAACTAATAAACACTTCATCGAAAAATCAGGAAAAATGCACAGTTAGCATTAAAATCAGTAGTTTACCTAGATACACACTGAAAAGAAATGCAGGAAAATAATCCCCAATCACAATAGCCTTGAAATCACGAAATGCAGGCTGGAGAGATGGTTCGGCAATTAAGGGCACTGGCTTCTCTTTCAGAGTCCTGGCGTTCAATTCCCAGCACCCACATGATGTCTTACGACTTTCTGTAATGGGATCGGATGTTCTCTTCTGTTGTATTGCTACACATACAGAAAAGGACCCACATTCATAAAATAGATAAATAAATATTTCTTTTTAAAATATATTTTTGTGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACCGACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGAATCCGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTCATATACAAAATAAATAAATAAATCTTTAAAAAATATATTTTTGTTTTATTATTTTTGAGGCAGGGTTTCTCTGTCTGACAACAATGGCTGTCCTGGAACCTCAAGCTCACAGAGCTCTGCCCGCCTCTGTCTTCTGATTGCTGGGATTAAAGATATGCCACCAACGCCCAGCTAATAATTCTTAAAAATCATAAAATGTAATAAACCACCCAAGGAAGTGAAAGACCTCTACAATGAAAACTTATAATATTGAAGAAAGAATCAGTTTTATCCAGTGGCAAACTCCCTGGTTGGTCAGCTCTAAACACATACATGTAGGGATAGCACTAAACATTTAATGCATTCATAAGTTATACATACATATGTATATGCAATATGAATATACATATATAATGTAGGTTATATATACATGTAGATGTGTGGTGTACATATGTGTGTGTATATAATATTTAGACAGAAGGTAATGGATTTGAGATGGAGTCAGAGGGACATGAGAGGAAATGGAGATGTTGAGAAACAATGAAAATGATAAAACTCTTCAAGCCCTTCCCCCATTTTGCTTAAAATAAACTAAGGAAGAGACTAGAAAATGGGAAGATACTCTCTTTCTATAGATTTACTTGTAGAACCAGTATTGTGAATATGGCCGTTCTACCTAAAGTAATCTTGAGATTCAACATAATCTTGGCTAAATTCCATTACTCTTCTAAGGAGAAGCAGTAAAATAATCTTGGAATTCATATGGAAACACAAAATGCCCTACGCGGTCAAAGCGATTATGAGTAAATTAGTGCTGCCAGAGCTTTGACTCTACCTGACTTCAAGTTACACTACAGAGCATTAGTGGTGAAAAGAACGTGGTCTTAGCACAGATATCAGCGGATAGAAGATCCAGACATAAATCGATGCAACTTCAGCCATATGATTTTGACAAATACACCAAGAAGTCACACTGCTGAAAAGATAGCGTTTTTGACAAATGGTATGGAGAAGCCTCAATATCTGTGCTAACAAGAACGAAACTAGTCTCTGCCCTAAAACCAACCCTGAACGGATGATCTCAAGACAAAGCCCAAAGCCCCGAAGGTAGGGGTGCGCTACAAGATGCAGACGTAGGTGGGAGCTTTCTTTGTGGGACACAGTTGTGCAGGAACTAAGACTAATGAATGACAAACAGATGTCTTCACACAACTCAAGAGTATCCGTTCACAGCATTTTCCCATGCCACCGTTGTTGTGGTATAGACGTTGCCTATGTAACCACTGTGTGATCATTTCCTCCTTATTTCAAGTGTTTGCAGTGGGATTCATCTTCTGATGGACAAGAGAAATAGTTAAAATGGACTCCAGATGTTTCCCATTGGAAGCAGGATCAGAAATGGACCAGCCGTGGGGAATCTTAGTTTATGAAAATGTCTCAAAGTAGCTTCCACTGAATCAGCAGAGCTGGAAGTACATGCTAGTGTAGGTTTTCTGCAGATAATGGAAAAAGTGAGATGGAATATACTTAGCGGATCAGTGATGAATATATATTCATATATGAACACACACATATATACACATATAATATACACACATATATATTATACATACTATATGTATACACAATACACACATCATATAGTGTATGCACGTGCATTATATATTTATATATATAATACACACGTAACATAAATGTATATAAAACACATGTATATAATATATGTGTATAAAATGTATTTATATACATTATATTTATGTGTGTTTATATGTGTGTGTGTTTATACCTATGAGCTAAAGTATTGTACACATGACTGTGTGATGGGGAGGACACGGGATGATTCAAGAAGTAAGAACTTAAGGGAACTCTTTGAAACTTAAAGCCAGGGGCTGGGGAATGTAGCTTGGAGGTATAAAACTTATCTAGCACATTCAAGGTTGTGCTAAGTTTGATCCCTAGGATCTCAAGGGAAAAGAGAAGAAGCAGTGGTTAGCGGCCTCTTGATTTTTTTCATTTAAAAAATAGGTGCATTTATTTTACATGCATAGGTGTTTTGTCTGCACGTATGTCTGTATACTCTGTGCATGCAGTGTCCAAGAAGCCAGAAGAGAGCCGTAGAAGAGTCAGTCGTAAGCTCTGGGTGGATGCTGGGAAGGGAACCCGGGTTCTCTGCAGGACTGACAGGCACTCTACCATTGAGACGTCCCTCTAGCTACCGGCCTGGACTTGTAAACTGATTTTATTTACAGTTTGCTCAGCACTCAGAATTCCTTGGTCTAAGGCAGGAGGAACTCTGCATCCACTAAACGCCAATTTAATTCTCCTCTTAATTCTCCTCTGCTTCCGGTAACCACCTTCTCGCTTACTGTTTCTAGGAATTTGACTACTTTACATACCCCATGCAGTGGAAACACACAGCATTTGTACCTTTTGGCTGGTTTGTTTCTGTTTCACATTGTATATTCCAAGCGGATCTGTCTTGAAACCTTTGACAGGATTTTCTTCCCGTTAAAGCTGAACAATGCTTACTATACAGATATGTATGTATTTGGTTTTGTTTCTTCATACTCCTGCTAATGGCCTTTGAGTTCTTTCTGCATCCTGGGTTGTCGTTAGGATGCTATTAACATGGCTGTCTGGATATCTCTTCAAAAGACCCCTGCTTGTTCTTTTGGATATATATCCGAAAGTAGGTCCTAACATAGTCTTGGCTTCTTCTGTGTTTTGAGTTGAAGTCTTGTGGTAAGTGATAGGTACGGTTTTGCAGATCAATAGATGATACTTGGATCTGCCACTAAAACTCCTTTTGTATTTGCAG
Seq C2 exon
GGCATCGTGGTGGTCTGGTTTGGGATACTGGAAGCTTCCCTGTCCATTCTGTTTATTGTGTGCAGTGTTTCTCCACATATCGCCATGAGTAGCATCAGTGATTTTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046890:ENSRNOT00000073149:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(12.4=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(9.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]