RnoINT0010332 @ rn6
Intron Retention
Gene
ENSRNOG00000046890 | Abca6
Description
ATP binding cassette subfamily A member 6 [Source:RGD Symbol;Acc:1308998]
Coordinates
chr10:98488879-98489753:-
Coord C1 exon
chr10:98489662-98489753
Coord A exon
chr10:98489000-98489661
Coord C2 exon
chr10:98488879-98488999
Length
662 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGG
5' ss Score
6.25
3' ss Seq
AATTCGATTGTTTCCCACAGGAT
3' ss Score
8.81
Exon sequences
Seq C1 exon
CCTTACTTCCATACTTTGCTGTTCATTTTTGTTCTGAGATGCCTGGAACTGAAGTATGGGAAGAATGTAGTACGGAAGGACCCCCTCTTCAG
Seq A exon
GTTAGGGTTACAGTTAATTTCATATTAAGGTCATAATTCAATATTTCTATTGCTGCGCCCGTGCTTTCGGTTTGTTGATTAGGACTTTTGCTTGCAACACAAGCAGTACGATGACTGGCACTGTAGTTAGTGGTTTTCTAGTTTACCGTCAAGAAGTAAGACCCAGCTGCTAACCAGCAGAGAAATACTTCATTCTCTCAAGAAAGCGAAGACTATCCAAGTATGCCATTCTCCCTTCTAAGGCGATGTCGTTCCTGAGCAGTGGGGATGGGAAGAAGAGATTGGACAACTGAGTTGAGAGAGTTTTACACAGAGGGCTTTGGGAAGTATGAGCAGTAAAAAGATGCCGAAACAAACATCTGATGTGTTGGCGGGGCTGTAGTGACTGGGGCAGCAGAATTGACTTGAATTTTAGGAGGGGAGGGGCGGCCTCTGTTGATATGCTGGCAAGCACTGGCCTTAAAGGTCAAAGATGCTGTAAGGGTAGCAACCACATCACGAGAGAGATTCTGGTGAGCAGGATGAGGGTTCTATGTAAGGCTGAGGCAGCAGGGATAGTGGCGATCACCATCAGCACTGGGCAAAAAGCAAACCGGTAAAATCGCACGGAAAACAAGCATGGGAAATGTGAGAACAGTGTGCAATTCGATTGTTTCCCACAG
Seq C2 exon
GATAGCTCCGCAGAGTCTACATGTTCAGCCAAACCCAGAGGAGCCCGTAGACGAAGACGAAGACGTTCAAGCAGAAAGAATGAGGACATCTGATGCCCTGAGCACCGTGAATTTAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046890:ENSRNOT00000073149:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.415
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(3.0=35.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTACTTCCATACTTTGCTGTTCA
R:
TAAATTCACGGTGCTCAGGGC
Band lengths:
207-869
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]