RnoINT0010408 @ rn6
Intron Retention
Gene
ENSRNOG00000004040 | Abca8
Description
ATP binding cassette subfamily A member 8 [Source:RGD Symbol;Acc:1307069]
Coordinates
chr10:98260552-98261801:-
Coord C1 exon
chr10:98261668-98261801
Coord A exon
chr10:98260563-98261667
Coord C2 exon
chr10:98260552-98260562
Length
1105 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGC
5' ss Score
9.55
3' ss Seq
TTTCAGACTATCCTCATTAGACT
3' ss Score
1.27
Exon sequences
Seq C1 exon
AGGCAAGCATTGATGACTTTATCCAGTCTGTGGAGCGCCAGAACATAGCTTTGGAAGTCGATGCTTCCGGAGCCAGAGATGGCACGGATGACCCATCCTTCAACGGAGCCCTTACAGTGTCTGGCGGTGAGAAG
Seq A exon
GTATGCTGGTCTCCAGCGCAGAAACTCCACCAAGTGTGTCAAGACAACATAGCCCTGAGATACCCAGGTCTCCAGTGTAAGAAATAGAAGCAAAAGCAAGTGCTGGATTTTTTTTTGCTTCGTGGACTTCATTTATTGATATGATAAATAATTCTTGGTTCTATCATGTTCGCCAACAAAACCCAGGTGTAGTAGCAAAATACACACGTCATTCAAGTTTATATACTTGATGCTATATCTGAGGCCAGGACATTCATATTTCCCTTATAGATCTTATACCATTTAAATATCTTAGAAATGCTGTTTTGTCTATGACAATAAACGCTTTAAAACATGATTCTAGCCCTAGGCAAGACAGCTGACAGATCAGACACATTTTTTTTATTCCAAATTTACTTACGCCAGGGGTTTGCTTTTATTTACACAGCATATTTTTTGTTTGTTTGTTTGTTTGTTTTTGAGATTACAATTTGCGCACAGCATTTGTGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGATTGCTTAAAGGAGGAAGAAGGAAGTGAAAGGAGTTGGAGGGGGGAGACTCATGCCTTAAAGAGGGGGGAGGGGAGAGAGGGACTCATTGCTTAAGAGGGGGGGAGGAGGGGGATAGGGAAGGAGTAGGGGAGACTCACACTTAAGGGGAGGAGGGTAGAAAAGGGAAGGAGAGGAGCTCATTGCTAAGGAGGGGGAAGGAGAAGGAAATGAGAGGAGATCATTTGCCATAAGGGGAGGGTGGGCGGACGGAGAGGGAGAGACTCATTTGCTTAAGGAGGGGGGGAGGGAGGGAAAGGAACAGGAGGAGGGAGGGACATCATACTTAAGAGGATCGGAGAGAGGGAAGGAGAGGGAGCGAAACTCACTACTTAGAGGGAGGGTAGAAGGGGAGCGGTAAGGATGAGGGGGGACTCGGGGAGACTCACTACTTAAGAGGGGGGAGAAGGAGGGGAAGGAGGAGGGGGAGACTCATTATTTTTAGGAAAGCTACCCAAGAAAGAAAGAAATCAGGACAAAGCTCAGCCTGGAATTTCAGACTATCCTCATTAG
Seq C2 exon
ACTCACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004040:ENSRNOT00000005489:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.044 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]